Optimizing Communication for Latency Sensitive HPC Applications on up to 48 FPGAs Using ACCL
M. Meyer, T. Kenter, L. Petrica, K. O’Brien, M. Blott, C. Plessl, ArXiv:2403.18374 (2024).
LibreCat: /record/53364
arXiv: 2403.18374

Characterizing Microheterogeneity in Liquid Mixtures via Local Density Fluctuations
M. Lass, T. Kenter, C. Plessl, M. Brehm, Entropy 26 (2024).
LibreCat: /record/53474
DOI: 10.3390/e26040322

Optimisation and Evaluation of Breadth First Search with oneAPI/SYCL on Intel FPGAs: from Describing Algorithms to Describing Architectures
K. Olgu, T. Kenter, J. Nunez-Yanez, S. Mcintosh-Smith, in: Proceedings of the 12th International Workshop on OpenCL and SYCL, ACM, 2024.
LibreCat: /record/53503
DOI: 10.1145/3648115.3648134

Scalable quantum detector tomography by high-performance computing
T. Schapeler, R. Schade, M. Lass, C. Plessl, T. Bartley, ArXiv:2404.02844 (2024).
LibreCat: /record/53202
arXiv: 2404.02844

SIMULATeQCD: A simple multi-GPU lattice code for QCD calculations
L. Mazur, D. Bollweg, D.A. Clarke, L. Altenkort, O. Kaczmarek, R. Larsen, H.-T. Shu, J. Goswami, P. Scior, H. Sandmeyer, M. Neumann, H. Dick, S. Ali, J. Kim, C. Schmidt, P. Petreczky, S. Mukherjee, Computer Physics Communications (2023).
LibreCat: /record/46120
DOI: 10.48550/ARXIV.2306.01098

Viscosity of pure-glue QCD from the lattice
L. Altenkort, A.M. Eller, A. Francis, O. Kaczmarek, L. Mazur, G.D. Moore, H.-T. Shu, Physical Review D 108 (2023).
LibreCat: /record/46119
DOI: 10.1103/physrevd.108.014503

Multi-FPGA Designs and Scaling of HPC Challenge Benchmarks via MPI and Circuit-Switched Inter-FPGA Networks
M. Meyer, T. Kenter, C. Plessl, ACM Transactions on Reconfigurable Technology and Systems (2023).
LibreCat: /record/38041
DOI: 10.1145/3576200

Compute Centers I: Heterogeneous Execution Environments
T. Hansmeier, T. Kenter, M. Meyer, H. Riebler, M. Platzner, C. Plessl, in: C.-J. Haake, F. Meyer auf der Heide, M. Platzner, H. Wachsmuth, H. Wehrheim (Eds.), On-The-Fly Computing -- Individualized IT-Services in Dynamic Markets, Heinz Nixdorf Institut, Universität Paderborn, Paderborn, 2023, pp. 165–182.
LibreCat: /record/45893
DOI: 10.5281/zenodo.8068642

Mutation Tree Reconstruction of Tumor Cells on FPGAs Using a Bit-Level Matrix Representation
J.-O. Opdenhövel, C. Plessl, T. Kenter, in: Proceedings of the 13th International Symposium on Highly Efficient Accelerators and Reconfigurable Technologies, ACM, 2023.
LibreCat: /record/46190
DOI: 10.1145/3597031.3597050

Computing and Compressing Electron Repulsion Integrals on FPGAs
X. Wu, T. Kenter, R. Schade, T. Kühne, C. Plessl, in: 2023 IEEE 31st Annual International Symposium on Field-Programmable Custom Computing Machines (FCCM), 2023, pp. 162–173.
LibreCat: /record/43228
DOI: 10.1109/FCCM57271.2023.00026
arXiv: 2303.13632

Breaking the exascale barrier for the electronic structure problem in ab-initio molecular dynamics
R. Schade, T. Kenter, H. Elgabarty, M. Lass, T. Kühne, C. Plessl, The International Journal of High Performance Computing Applications (2023).
LibreCat: /record/45361
DOI: 10.1177/10943420231177631

Hydrodynamic and Non-hydrodynamic Excitations in Kinetic Theory -- A  Numerical Analysis in Scalar Field Theory
S. Ochsenfeld, S. Schlichting, ArXiv:2308.04491 (2023).
LibreCat: /record/50172
arXiv: 2308.04491

Memory Gym: Towards Endless Tasks to Benchmark Memory Capabilities of  Agents
M. Pleines, M. Pallasch, F. Zimmer, M. Preuss, ArXiv:2309.17207 (2023).
LibreCat: /record/50221
arXiv: 2309.17207

Shallow Water DG Simulations on FPGAs: Design and Comparison of a Novel Code Generation Pipeline
C. Alt, T. Kenter, S. Faghih-Naini, J. Faj, J.-O. Opdenhövel, C. Plessl, V. Aizinger, J. Hönig, H. Köstler, in: Lecture Notes in Computer Science, Springer Nature Switzerland, Cham, 2023.
LibreCat: /record/46191
DOI: 10.1007/978-3-031-32041-5_5

A computation of D(9) using FPGA Supercomputing
L. Van Hirtum, P. De Causmaecker, J. Goemaere, T. Kenter, H. Riebler, M. Lass, C. Plessl, ArXiv:2304.03039 (2023).
LibreCat: /record/43439
arXiv: 2304.03039

Scalable Multi-FPGA Design of a Discontinuous Galerkin Shallow-Water Model on Unstructured Meshes
J. Faj, T. Kenter, S. Faghih-Naini, C. Plessl, V. Aizinger, in: Proceedings of the Platform for Advanced Scientific Computing Conference (PASC), ACM, 2023.
LibreCat: /record/46188
DOI: 10.1145/3592979.3593407

FPGA Acceleration for HPC Supercapacitor Simulations
C. Prouveur, M. Haefele, T. Kenter, N. Voss, in: Proceedings of the Platform for Advanced Scientific Computing Conference (PASC), ACM, 2023.
LibreCat: /record/46189
DOI: 10.1145/3592979.3593419

Early time behavior of spatial and momentum anisotropies in kinetic  theory across different Knudsen numbers
N. Borghini, M. Borrell, H. Roch, ArXiv:2201.13294 (2022).
LibreCat: /record/32177
arXiv: 2201.13294

Even anisotropic-flow harmonics are from Venus, odd ones are from Mars
B. Bachmann, N. Borghini, N. Feld, H. Roch, ArXiv:2203.13306 (2022).
LibreCat: /record/32178
arXiv: 2203.13306

Linearly shifting ferromagnetic resonance response of L.7S.3MnO3 thin film for body temperature sensors
W. Hou, Y. Yao, Y. Li, B. Peng, K. Shi, Z. Zhou, J. Pan, M. Liu, J. Hu, Frontiers of Materials Science 16 (2022).
LibreCat: /record/32183

Dataset for random uniform distributions of 2D circles and 3D spheres.
M. Wojciechowski, Data Brief 43 (2022) 108318.
LibreCat: /record/32234
PMID: 35677623

Bringing Massive Parallelism and Hardware Acceleration to Linear Scaling Density Functional Theory Through Targeted Approximations
M. Lass, Bringing Massive Parallelism and Hardware Acceleration to Linear Scaling Density Functional Theory Through Targeted Approximations, Universität Paderborn, Paderborn, 2022.
LibreCat: /record/32414
DOI: 10.17619/UNIPB/1-1281

Bridging HPC Communities through the Julia Programming Language
V. Churavy, W.F. Godoy, C. Bauer, H. Ranocha, M. Schlottke-Lakemper, L. Räss, J. Blaschke, M. Giordano, E. Schnetter, S. Omlin, J.S. Vetter, A. Edelman, (2022).
LibreCat: /record/36879

Nonlinear down-conversion in a single quantum dot
B. Jonas, D.F. Heinze, E. Schöll, P. Kallert, T. Langer, S. Krehs, A. Widhalm, K. Jöns, D. Reuter, S. Schumacher, A. Zrenner, Nature Communications 13 (2022).
LibreCat: /record/40523
DOI: 10.1038/s41467-022-28993-3

Lattice QCD noise reduction for bosonic correlators through blocking
L. Altenkort, A.M. Eller, O. Kaczmarek, L. Mazur, G.D. Moore, H.-T. Shu, Physical Review D 105 (2022).
LibreCat: /record/46121
DOI: 10.1103/physrevd.105.094505

Roadmap on Electronic Structure Codes in the Exascale Era
V. Gavini, S. Baroni, V. Blum, D.R. Bowler, A. Buccheri, J.R. Chelikowsky, S. Das, W. Dawson, P. Delugas, M. Dogan, C. Draxl, G. Galli, L. Genovese, P. Giannozzi, M. Giantomassi, X. Gonze, M. Govoni, A. Gulans, F. Gygi, J.M. Herbert, S. Kokott, T. Kühne, K.-H. Liou, T. Miyazaki, P. Motamarri, A. Nakata, J.E. Pask, C. Plessl, L.E. Ratcliff, R.M. Richard, M. Rossi, R. Schade, M. Scheffler, O. Schütt, P. Suryanarayana, M. Torrent, L. Truflandier, T.L. Windus, Q. Xu, V.W.-Z. Yu, D. Perez, ArXiv:2209.12747 (2022).
LibreCat: /record/33493
arXiv: 2209.12747

A High-Fidelity Flow Solver for Unstructured Meshes on Field-Programmable Gate Arrays: Design, Evaluation, and Future Challenges
M. Karp, A. Podobas, T. Kenter, N. Jansson, C. Plessl, P. Schlatter, S. Markidis, in: International Conference on High Performance Computing in Asia-Pacific Region, ACM, 2022.
LibreCat: /record/46193
DOI: 10.1145/3492805.3492808

CK on the road to exascale
T. Kühne, C. Plessl, R. Schade, O. Schütt, ArXiv:2205.14741 (2022).
LibreCat: /record/32404
arXiv: 2205.14741

Parallel quantum chemistry on noisy intermediate-scale quantum computers
R. Schade, C. Bauer, K. Tamoev, L. Mazur, C. Plessl, T. Kühne, Phys. Rev. Research 4 (2022) 033160.
LibreCat: /record/33226
DOI: 10.1103/PhysRevResearch.4.033160

Roadmap on Electronic Structure Codes in the Exascale Era
V. Gavini, S. Baroni, V. Blum, D.R. Bowler, A. Buccheri, J.R. Chelikowsky, S. Das, W. Dawson, P. Delugas, M. Dogan, C. Draxl, G. Galli, L. Genovese, P. Giannozzi, M. Giantomassi, X. Gonze, M. Govoni, A. Gulans, F. Gygi, J.M. Herbert, S. Kokott, T. Kühne, K.-H. Liou, T. Miyazaki, P. Motamarri, A. Nakata, J.E. Pask, C. Plessl, L.E. Ratcliff, R.M. Richard, M. Rossi, R. Schade, M. Scheffler, O. Schütt, P. Suryanarayana, M. Torrent, L. Truflandier, T.L. Windus, Q. Xu, V.W.-Z. Yu, D. Perez, ArXiv:2209.12747 (2022).
LibreCat: /record/46275
arXiv: 2209.12747

Towards electronic structure-based ab-initio molecular dynamics simulations with hundreds of millions of atoms
R. Schade, T. Kenter, H. Elgabarty, M. Lass, O. Schütt, A. Lazzaro, H. Pabst, S. Mohr, J. Hutter, T. Kühne, C. Plessl, Parallel Computing 111 (2022).
LibreCat: /record/33684
DOI: 10.1016/j.parco.2022.102920

In-depth FPGA Accelerator Performance Evaluation with Single Node Benchmarks from the HPC Challenge Benchmark Suite for Intel and Xilinx FPGAs using OpenCL
M. Meyer, T. Kenter, C. Plessl, Journal of Parallel and Distributed Computing (2022).
LibreCat: /record/27364
DOI: 10.1016/j.jpdc.2021.10.007

Stable bipolarons in open quantum systems
M. Moroder, M. Grundner, F. Damanet, U. Schollwöck, S. Mardazad, S. Flannigan, T. Köhler, S. Paeckel, Physical Review B 107, 214310 (2023) (2022).
LibreCat: /record/50146
DOI: 10.1103/PhysRevB.107.214310
arXiv: 2207.08243

Statistical analysis of initial state and final state response in  heavy-ion collisions
N. Borghini, M. Borrell, N. Feld, H. Roch, S. Schlichting, C. Werthmann, Phys. Rev. C 107 (2023) 034905 (2022).
LibreCat: /record/50148
DOI: 10.1103/PhysRevC.107.034905
arXiv: 2209.01176

Plant mitochondrial RNA editing factors can perform targeted C-to-U editing of nuclear transcripts in human cells
E. Lesch, M.T. Schilling, S. Brenner, Y. Yang, O.J. Gruss, V. Knoop, M. Schallenberg-Rüdinger, Nucleic Acids Research 50 (2022) 9966–9983.
LibreCat: /record/50149
DOI: 10.1093/nar/gkac752

The Strong Scaling Advantage of FPGAs in HPC for N-body Simulations
J. Menzel, C. Plessl, T. Kenter, ACM Transactions on Reconfigurable Technology and Systems 15 (2021) 1–30.
LibreCat: /record/28099
DOI: 10.1145/3491235

Towards Performance Characterization of FPGAs in Context of HPC using OpenCL Benchmarks
M. Meyer, in: Proceedings of the 11th International Symposium on Highly Efficient Accelerators and Reconfigurable Technologies, 2021.
LibreCat: /record/27365
DOI: 10.1145/3468044.3468058

Generating Physically Sound Training Data for Image Recognition of Additively Manufactured Parts
T. Nickchen, S. Heindorf, G. Engels, in: Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision, 2021, pp. 1994–2002.
LibreCat: /record/20886

How irreversible are steady-state trajectories of a trapped active particle?
L. Dabelow, S. Bo, R. Eichhorn, Journal of Statistical Mechanics: Theory and Experiment 2021 (2021).
LibreCat: /record/32243
DOI: 10.1088/1742-5468/abe6fd

Towards Electronic Structure-Based Ab-Initio Molecular Dynamics  Simulations with Hundreds of Millions of Atoms
R. Schade, T. Kenter, H. Elgabarty, M. Lass, O. Schütt, A. Lazzaro, H. Pabst, S. Mohr, J. Hutter, T.D. Kühne, C. Plessl, ArXiv:2104.08245 (2021).
LibreCat: /record/32244
arXiv: 2104.08245

Optimization of optical waveguide antennas for directive emission of  light
H. Farheen, T. Leuteritz, S. Linden, V. Myroshnychenko, J. Förstner, ArXiv:2106.02468 (2021).
LibreCat: /record/32245
arXiv: 2106.02468

Steady states of $9b$-type three-level systems excited by quantum  light in lossy cavities
H. Rose, O.V. Tikhonova, T. Meier, P. Sharapova, ArXiv:2109.00842 (2021).
LibreCat: /record/32236
arXiv: 2109.00842

Eigenvalue spectra of QCD and the fate of <mml:math xmlns:mml="http://www..org/1998/Math/MathML" display="inline"><mml:msub><mml:mi>U</mml:mi><mml:mi>A</mml:mi></mml:msub><mml:mo stretchy="false">(</mml:mo><mml:mn>1</mml:mn><mml:mo stretchy="false">)</mml:mo></mml:math> breaking towards the chiral limit
O. Kaczmarek, L. Mazur, S. Sharma, Physical Review D 104 (2021).
LibreCat: /record/46122
DOI: 10.1103/physrevd.104.094518

Heavy quark momentum diffusion from the lattice using gradient flow
L. Altenkort, A.M. Eller, O. Kaczmarek, L. Mazur, G.D. Moore, H.-T. Shu, Physical Review D 103 (2021).
LibreCat: /record/46124
DOI: 10.1103/physrevd.103.014511

Sphaleron rate from Euclidean lattice correlators: An exploration
L. Altenkort, A.M. Eller, O. Kaczmarek, L. Mazur, G.D. Moore, H.-T. Shu, Physical Review D 103 (2021).
LibreCat: /record/46123
DOI: 10.1103/physrevd.103.114513

High-Performance Spectral Element Methods on Field-Programmable Gate Arrays : Implementation, Evaluation, and Future Projection
M. Karp, A. Podobas, N. Jansson, T. Kenter, C. Plessl, P. Schlatter, S. Markidis, in: 2021 IEEE International Parallel and Distributed Processing Symposium (IPDPS), IEEE, 2021.
LibreCat: /record/46195
DOI: 10.1109/ipdps49936.2021.00116

HighPerMeshes – A Domain-Specific Language for Numerical Algorithms on Unstructured Grids
S. Alhaddad, J. Förstner, S. Groth, D. Grünewald, Y. Grynko, F. Hannig, T. Kenter, F.-J. Pfreundt, C. Plessl, M. Schotte, T. Steinke, J. Teich, M. Weiser, F. Wende, in: Euro-Par 2020: Parallel Processing Workshops, Cham, 2021.
LibreCat: /record/21587
DOI: 10.1007/978-3-030-71593-9_15

Evaluating the Design Space for Offloading 3D FFT Calculations to an FPGA for High-Performance Computing
A. Ramaswami, T. Kenter, T. Kühne, C. Plessl, in: Applied Reconfigurable Computing. Architectures, Tools, and Applications, Springer International Publishing, Cham, 2021.
LibreCat: /record/29936
DOI: 10.1007/978-3-030-79025-7_21

The HighPerMeshes framework for numerical algorithms on unstructured grids
S. Alhaddad, J. Förstner, S. Groth, D. Grünewald, Y. Grynko, F. Hannig, T. Kenter, F. Pfreundt, C. Plessl, M. Schotte, T. Steinke, J. Teich, M. Weiser, F. Wende, Concurrency and Computation: Practice and Experience (2021) e6616.
LibreCat: /record/24788
DOI: 10.1002/cpe.6616

Diffusion of the carbon dioxide–ethanol mixture in the extended critical region
R.S. Chatwell, G. Guevara-Carrion, Y. Gaponenko, V. Shevtsova, J. Vrabec, Physical Chemistry Chemical Physics 23 (2021) 3106–3115.
LibreCat: /record/32240
DOI: 10.1039/d0cp04985a