One Phase Commit: A Low Overhead Atomic Commitment Protocol for Scalable Metadata Services
G. Congiu, M. Grawinkel, S. Narasimhamurthy, A. Brinkmann, in: Proc. Workshop on Interfaces and Architectures for Scientific Data Storage (IASDS), IEEE, 2012, pp. 16–24.

A Data Driven Science Gateway for Computational Workflows
R. Grunzke, G. Birkenheuer, D. Blunk, S. Breuers, A. Brinkmann, S. Gesing, S. Herres-Pawlis, O. Kohlbacher, J. Krüger, M. Kruse, R. Müller-Pfefferkorn, P. Schäfer, B. Schuller, T. Steinke, A. Zink, in: Proc. UNICORE Summit, 2012.

Design of an exact data deduplication cluster
J. Kaiser, D. Meister, A. Brinkmann, S. Effert, in: Proc. Symp. on Mass Storage Systems and Technologies (MSST), IEEE, 2012, pp. 1–12.

The MoSGrid Community From National to International Scale
S. Gesing, S. Herres-Pawlis, G. Birkenheuer, A. Brinkmann, R. Grunzke, P. Kacsuk, O. Kohlbacher, M. Kozlovszky, J. Krüger, R. Müller-Pfefferkorn, P. Schäfer, T. Steinke, in: Proc. EGI Community Forum, 2012.

STIR: Software for Tomographic Image Reconstruction Release 2
K. Thielemans, C. Tsoumpas, S. Mustafovic, T. Beisel, P. Aguiar, N. Dikaios, M. W Jacobson, Physics in Medicine and Biology 57 (2012) 867–883.

Parallel algorithm for computation of second-order sequential best rotations
S. Redif, S. Kasap, Int. Journal of Electronics 100 (2012) 1646–1651.

Parallel Processor Design and Implementation for Molecular Dynamics Simulations on a FPGA Parallel Computer
S. Kasap, K. Benkrid, Journal of Computers 7 (2012) 1312–1328.

Workflow-enhanced conformational analysis of guanidine zinc complexes via a science gateway
S. Herres-Pawlis, G. Birkenheuer, A. Brinkmann, S. Gesing, R. Grunzke, R. Jäkel, O. Kohlbacher, J. Krüger, I. Dos Santos Vieira, Studies in Health Technology and Informatics 175 (2012) 142–151.

A Science Gateway Getting Ready for Serving the International Molecular Simulation Community
S. Gesing, S. Herres-Pawlis, G. Birkenheuer, A. Brinkmann, R. Grunzke, P. Kacsuk, O. Kohlbacher, M. Kozlovszky, J. Krüger, R. Müller-Pfefferkorn, P. Schäfer, T. Steinke, in: Proceedings of Science, 2012.

Programming models for reconfigurable heterogeneous multi-cores
C. Plessl, M. Platzner, A. Agne, M. Happe, E. Lübbers, Programming Models for Reconfigurable Heterogeneous Multi-Cores, Awareness Magazine, 2012.

Convey Vector Personalities – FPGA Acceleration with an OpenMP-like Effort?
B. Meyer, J. Schumacher, C. Plessl, J. Förstner, in: Proc. Int. Conf. on Field Programmable Logic and Applications (FPL), IEEE, 2012, pp. 189–196.

IMORC: An Infrastructure and Architecture Template for Implementing High-Performance Reconfigurable FPGA Accelerators
T. Schumacher, C. Plessl, M. Platzner, Microprocessors and Microsystems 36 (2012) 110–126.

Eight Ways to put your FPGA on Fire – A Systematic Study of Heat Generators
M. Happe, H. Hangmann, A. Agne, C. Plessl, in: Proceedings of the International Conference on Reconfigurable Computing and FPGAs (ReConFig), IEEE, 2012, pp. 1–8.

Pragma based parallelization - Trading hardware efficiency for ease of use?
T. Kenter, C. Plessl, H. Schmitz, in: Proceedings of the International Conference on ReConFigurable Computing and FPGAs (ReConFig), IEEE, 2012, pp. 1–8.

Hardware/Software Platform for Self-aware Compute Nodes
M. Happe, A. Agne, C. Plessl, M. Platzner, in: Proceedings of the Workshop on Self-Awareness in Reconfigurable Computing Systems (SRCS), 2012, pp. 8–9.

Turning control flow graphs into function calls: Code generation for heterogeneous architectures
P. Barrio, C. Carreras, R. Sierra, T. Kenter, C. Plessl, in: Proceedings of the International Conference on High Performance Computing and Simulation (HPCS), IEEE, 2012, pp. 559–565.

Exploration of Ring Oscillator Design Space for Temperature Measurements on FPGAs
C. Rüthing, M. Happe, A. Agne, C. Plessl, in: Proceedings of the International Conference on Field Programmable Logic and Applications (FPL), IEEE, 2012, pp. 559–562.

Programming and Scheduling Model for Supporting Heterogeneous Accelerators in Linux
T. Beisel, T. Wiersema, C. Plessl, A. Brinkmann, in: Proc. Workshop on Computer Architecture and Operating System Co-Design (CAOS), 2012.

On the Feasibility and Limitations of Just-In-Time Instruction Set Extension for FPGA-based Reconfigurable Processors
M. Grad, C. Plessl, Int. Journal of Reconfigurable Computing (IJRC) (2012).

Rule Based Mapping of Virtual Machines in Clouds
C. Kleineweber, A. Keller, O. Niehörster, A. Brinkmann, in: Proc. Int. Conf. on Parallel, Distributed and Network-Based Computing (PDP), 2011.

Virtualized HPC: a contradiction in terms?
G. Birkenheuer, A. Brinkmann, J. Kaiser, A. Keller, M. Keller, C. Kleineweber, C. Konersmann, O. Niehörster, T. Schäfer, J. Simon, M. Wilhelm, Software: Practice and Experience (2011).

An Energy-Aware SaaS Stack
O. Niehörster, A. Keller, A. Brinkmann, in: Proc. Int. Meeting of the IEEE Int. Symp. on Modeling, Analysis and Simulation of Computer and Telecommunication Systems (MASCOTS), 2011.

Reliable and Randomized Data Distribution Strategies for Large Scale Storage Systems
A. Miranda, S. Effert, Y. Kang, E. Miller, A. Brinkmann, T. Cortes, in: Proc. Int. Conf. on High Performance Computing (HIPC), IEEE Computer Society, Washington, DC, 2011, pp. 1–10.

Lonestar: An Energy-Aware Disk Based Long-Term Archival Storage System
M. Grawinkel, M. Pargmann, H. Dömer, A. Brinkmann, in: Proc. IEEE Int. Conf. on Parallel and Distributed Systems (ICPADS), IEEE, 2011, pp. 380–387.

Autonomic Resource Management Handling Delayed Configuration Effects
O. Niehörster, A. Brinkmann, in: Proc. IEEE Int. Conf. on Cloud Computing Technology and Science (CloudCom), IEEE Computer Society, Washington DC, USA, 2011, pp. 138–145.

Estimation and Partitioning for CPU-Accelerator Architectures
T. Kenter, C. Plessl, M. Platzner, M. Kauschke, in: Intel European Research and Innovation Conference, 2011.

Infrastructure Federation Through Virtualized Delegation of Resources and Services
G. Birkenheuer, A. Brinkmann, M. Högqvist, A. Papaspyrou, B. Schott, D. Sommerfeld, W. Ziegler, Journal of Grid Computing 9 (2011) 355–377.

Evaluation of Applied Intra-Disk Redundancy Schemes to Improve Single Disk Reliability
M. Grawinkel, T. Schäfer, A. Brinkmann, J. Hagemeyer, M. Porrmann, in: Proc. Int. Symp. on Modeling, Analysis and Simulation of Computer and Telecommunication Systems (MASCOTS), IEEE Computer Society, 2011, pp. 297–306.

Request Load Balancing for Highly Skewed Traffic in P Networks
A. Brinkmann, Y. Gao, M. Korzeniowski, D. Meister, in: Proc. IEEE Int. Conf. on Networking, Architecture and Storage (NAS), IEEE, 2011, pp. 53–62.

Granular Security for a Science Gateway in Structural Bioinformatics
S. Gesing, R. Grunzke, Á. Balaskó, G. Birkenheuer, D. Blunk, S. Breuers, A. Brinkmann, G. Fels, S. Herres-Pawlis, P. Kacsuk, M. Kozlovszky, J. Krüger, L. Packschies, P. Schäfer, B. Schuller, J. Schuster, T. Steinke, A. Szikszay Fabri, M. Wewior, R. Müller-Pfefferkorn, O. Kohlbacher, in: Proc. Int. Workshop on Scientific Gateways (IWSG), Consorzio COMETA, 2011.

A Science Gateway for Molecular Simulations
S. Gesing, P. Kacsuk, M. Kozlovszky, G. Birkenheuer, D. Blunk, S. Breuers, A. Brinkmann, G. Fels, R. Grunzke, S. Herres-Pawlis, J. Krüger, L. Packschies, R. Müller-Pfefferkorn, P. Schäfer, T. Steinke, A. Szikszay Fabri, K.-D. Warzecha, M. Wewior, O. Kohlbacher, in: Proc. EGI User Forum, 2011, pp. 94–95.

Hardware Virtualization on Dynamically Reconfigurable Embedded Processors
C. Plessl, M. Platzner, in: M. Khalgui, H.-M. Hanisch (Eds.), Reconfigurable Embedded Control Systems: Applications for Flexibility and Agility, IGI Global, Hershey, PA, USA, 2011.

Autonomic Resource Management with Support Vector Machines
O. Niehörster, J. Simon, A. Brinkmann, A. Krieger, in: Proc. IEEE/ACM Int. Conf. on Grid Computing (GRID), IEEE Computer Society, Washington, DC, USA, 2011, pp. 157–164.

Parallel Monte-Carlo Tree Search for HPC Systems
T. Graf, U. Lorenz, M. Platzner, L. Schaefers, in: Proc. European Conf. on Parallel Processing (Euro-Par), Springer, Berlin / Heidelberg, 2011.

MoSGrid: Progress of Workflow driven Chemical Simulations
G. Birkenheuer, D. Blunk, S. Breuers, A. Brinkmann, G. Fels, S. Gesing, R. Grunzke, S. Herres-Pawlis, O. Kohlbacher, J. Krüger, U. Lang, L. Packschies, R. Müller-Pfefferkorn, P. Schäfer, J. Schuster, T. Steinke, K.-D. Warzecha, M. Wewior, in: Proc. of Grid Workflow Workshop (GWW), 2011.

Transformation of scientific algorithms to parallel computing code: subdomain support in a MPI-multi-GPU backend
B. Meyer, C. Plessl, J. Förstner, in: Symp. on Application Accelerators in High Performance Computing (SAAHPC), IEEE Computer Society, 2011, pp. 60–63.

Cooperative multitasking for heterogeneous accelerators in the Linux Completely Fair Scheduler
T. Beisel, T. Wiersema, C. Plessl, A. Brinkmann, in: Proc. Int. Conf. on Application-Specific Systems, Architectures, and Processors (ASAP), IEEE Computer Society, 2011, pp. 223–226.

Measuring and Predicting Temperature Distributions on FPGAs at Run-Time
M. Happe, A. Agne, C. Plessl, in: Proceedings of the 2011 International Conference on Reconfigurable Computing and FPGAs (ReConFig), IEEE, 2011, pp. 55–60.

Performance Estimation Framework for Automated Exploration of CPU-Accelerator Architectures
T. Kenter, M. Platzner, C. Plessl, M. Kauschke, in: Proc. Int. Symp. on Field-Programmable Gate Arrays (FPGA), ACM, New York, NY, USA, 2011, pp. 177–180.

FPGA Acceleration of Communication-bound Streaming Applications: Architecture Modeling and a 3D Image Compositing Case Study
T. Schumacher, T. Süß, C. Plessl, M. Platzner, Int. Journal of Recon- Figurable Computing (IJRC) (2011).

Just-in-time Instruction Set Extension – Feasibility and Limitations for an FPGA-based Reconfigurable ASIP Architecture
M. Grad, C. Plessl, in: Proc. Reconfigurable Architectures Workshop (RAW), IEEE Computer Society, 2011, pp. 278–285.

SkewCCC+: A Heterogeneous Distributed Hash Table
M. Bienkowski, A. Brinkmann, M. Klonowski, M. Korzeniowski, in: Proceedings of the 14th International Conference On Principles Of Distributed Systems (Opodis), Springer, Berlin / Heidelberg, 2010.

The MoSGrid Gaussian Portlet - Technologies for the Implementation of Portlets for Molecular Simulations
M. Wewior, L. Packschies, D. Blunk, D. Wickeroth, K.-D. Warzecha, S. Herres-Pawlis, S. Gesing, S. Breuers, J. Krüger, G. Birkenheuer, U. Lang, in: Proc. Int. Workshop on Scientific Gateways (IWSG), Consorzio COMETA, 2010, pp. 39–43.

Workflow Interoperability in a Grid Portal for Molecular Simulations
S. Gesing, I. Marton, G. Birkenheuer, B. Schuller, R. Grunzke, J. Krüger, S. Breuers, D. Blunk, G. Fels, L. Packschies, A. Brinkmann, O. Kohlbacher, M. Kozlovszky, in: Proc. Int. Workshop on Scientific Gateways (IWSG), Consorzio COMETA, 2010, pp. 44–48.

Reliability Analysis of Declustered-Parity RAID 6 with Disk Scrubbing and Considering Irrecoverable Read Errors
Y. Gao, D. Meister, A. Brinkmann, in: Proc. IEEE Int. Conf. on Networking, Architecture and Storage (NAS), IEEE, 2010, pp. 126–134.

Balls into Bins with Related Random Choices
P. Berenbrink, A. Brinkmann, T. Friedetzky, L. Nagel, in: Proc. Int. Symp. on Parallelism in Algorithms and Architectures (SPAA), ACM, New York, 2010, pp. 100–105.

dedup: Improving Deduplication Throughput using Solid State Drives (SSD)
D. Meister, A. Brinkmann, in: Proc. Symp. on Mass Storage Systems and Technologies (MSST), IEEE Computer Society, Washington, DC, 2010, pp. 1–6.

hashFS: Applying Hashing to Optimized File Systems for Small File Reads
P.H. Lensing, D. Meister, A. Brinkmann, in: Proc. Int. Worksh. on Storage Network Architecture and Parallel I/Os (SNAPI), IEEE, 2010, pp. 33–42.

Balls into Non-uniform Bins
P. Berenbrink, A. Brinkmann, T. Friedetzky, L. Nagel, in: Proc. Int. Symp. on Parallel and Distributed Processing (IPDPS), IEEE, 2010, pp. 1–10.

Open Source Middleware for Networked Embedded Systems towards Future Internet of Things
N. R. Prasad, M. Eisenhauer, M. Ahlsén, A. Badii, A. Brinkmann, K. Marius Hansen, P. Rosengren, in: H. Sundmaeker, P. Guillemin, P. Friess, S. Woelfflé (Eds.), Vision and Challenges for Realising the Internet of Things, European Commission, 2010, pp. 153–163.