[{"user_id":"90492","date_created":"2023-07-24T10:58:37Z","status":"public","volume":105,"publication":"Physical Review D","publisher":"American Physical Society (APS)","quality_controlled":"1","author":[{"first_name":"Luis","full_name":"Altenkort, Luis","last_name":"Altenkort"},{"first_name":"Alexander M.","full_name":"Eller, Alexander M.","last_name":"Eller"},{"full_name":"Kaczmarek, O.","first_name":"O.","last_name":"Kaczmarek"},{"orcid":" 0000-0001-6304-7082","full_name":"Mazur, Lukas","first_name":"Lukas","id":"90492","last_name":"Mazur"},{"first_name":"Guy D.","full_name":"Moore, Guy D.","last_name":"Moore"},{"full_name":"Shu, Hai-Tao","first_name":"Hai-Tao","last_name":"Shu"}],"issue":"9","article_number":"094505","intvolume":" 105","_id":"46121","type":"journal_article","year":"2022","citation":{"ieee":"L. Altenkort, A. M. Eller, O. Kaczmarek, L. Mazur, G. D. Moore, and H.-T. Shu, “Lattice QCD noise reduction for bosonic correlators through blocking,” Physical Review D, vol. 105, no. 9, Art. no. 094505, 2022, doi: 10.1103/physrevd.105.094505.","short":"L. Altenkort, A.M. Eller, O. Kaczmarek, L. Mazur, G.D. Moore, H.-T. Shu, Physical Review D 105 (2022).","mla":"Altenkort, Luis, et al. “Lattice QCD Noise Reduction for Bosonic Correlators through Blocking.” Physical Review D, vol. 105, no. 9, 094505, American Physical Society (APS), 2022, doi:10.1103/physrevd.105.094505.","bibtex":"@article{Altenkort_Eller_Kaczmarek_Mazur_Moore_Shu_2022, title={Lattice QCD noise reduction for bosonic correlators through blocking}, volume={105}, DOI={10.1103/physrevd.105.094505}, number={9094505}, journal={Physical Review D}, publisher={American Physical Society (APS)}, author={Altenkort, Luis and Eller, Alexander M. and Kaczmarek, O. and Mazur, Lukas and Moore, Guy D. and Shu, Hai-Tao}, year={2022} }","ama":"Altenkort L, Eller AM, Kaczmarek O, Mazur L, Moore GD, Shu H-T. Lattice QCD noise reduction for bosonic correlators through blocking. Physical Review D. 2022;105(9). doi:10.1103/physrevd.105.094505","apa":"Altenkort, L., Eller, A. M., Kaczmarek, O., Mazur, L., Moore, G. D., & Shu, H.-T. (2022). Lattice QCD noise reduction for bosonic correlators through blocking. Physical Review D, 105(9), Article 094505. https://doi.org/10.1103/physrevd.105.094505","chicago":"Altenkort, Luis, Alexander M. Eller, O. Kaczmarek, Lukas Mazur, Guy D. Moore, and Hai-Tao Shu. “Lattice QCD Noise Reduction for Bosonic Correlators through Blocking.” Physical Review D 105, no. 9 (2022). https://doi.org/10.1103/physrevd.105.094505."},"title":"Lattice QCD noise reduction for bosonic correlators through blocking","publication_identifier":{"issn":["2470-0010","2470-0029"]},"publication_status":"published","department":[{"_id":"27"}],"doi":"10.1103/physrevd.105.094505","date_updated":"2023-07-26T09:23:17Z","language":[{"iso":"eng"}]},{"_id":"33493","date_updated":"2023-07-28T08:03:41Z","citation":{"short":"V. Gavini, S. Baroni, V. Blum, D.R. Bowler, A. Buccheri, J.R. Chelikowsky, S. Das, W. Dawson, P. Delugas, M. Dogan, C. Draxl, G. Galli, L. Genovese, P. Giannozzi, M. Giantomassi, X. Gonze, M. Govoni, A. Gulans, F. Gygi, J.M. Herbert, S. Kokott, T. Kühne, K.-H. Liou, T. Miyazaki, P. Motamarri, A. Nakata, J.E. Pask, C. Plessl, L.E. Ratcliff, R.M. Richard, M. Rossi, R. Schade, M. Scheffler, O. Schütt, P. Suryanarayana, M. Torrent, L. Truflandier, T.L. Windus, Q. Xu, V.W.-Z. Yu, D. Perez, ArXiv:2209.12747 (2022).","ieee":"V. Gavini et al., “Roadmap on Electronic Structure Codes in the Exascale Era,” arXiv:2209.12747. 2022.","apa":"Gavini, V., Baroni, S., Blum, V., Bowler, D. R., Buccheri, A., Chelikowsky, J. R., Das, S., Dawson, W., Delugas, P., Dogan, M., Draxl, C., Galli, G., Genovese, L., Giannozzi, P., Giantomassi, M., Gonze, X., Govoni, M., Gulans, A., Gygi, F., … Perez, D. (2022). Roadmap on Electronic Structure Codes in the Exascale Era. In arXiv:2209.12747.","ama":"Gavini V, Baroni S, Blum V, et al. Roadmap on Electronic Structure Codes in the Exascale Era. arXiv:220912747. Published online 2022.","chicago":"Gavini, Vikram, Stefano Baroni, Volker Blum, David R. Bowler, Alexander Buccheri, James R. Chelikowsky, Sambit Das, et al. “Roadmap on Electronic Structure Codes in the Exascale Era.” ArXiv:2209.12747, 2022.","mla":"Gavini, Vikram, et al. “Roadmap on Electronic Structure Codes in the Exascale Era.” ArXiv:2209.12747, 2022.","bibtex":"@article{Gavini_Baroni_Blum_Bowler_Buccheri_Chelikowsky_Das_Dawson_Delugas_Dogan_et al._2022, title={Roadmap on Electronic Structure Codes in the Exascale Era}, journal={arXiv:2209.12747}, author={Gavini, Vikram and Baroni, Stefano and Blum, Volker and Bowler, David R. and Buccheri, Alexander and Chelikowsky, James R. and Das, Sambit and Dawson, William and Delugas, Pietro and Dogan, Mehmet and et al.}, year={2022} }"},"year":"2022","type":"preprint","language":[{"iso":"eng"}],"abstract":[{"lang":"eng","text":"Electronic structure calculations have been instrumental in providing many\r\nimportant insights into a range of physical and chemical properties of various\r\nmolecular and solid-state systems. Their importance to various fields,\r\nincluding materials science, chemical sciences, computational chemistry and\r\ndevice physics, is underscored by the large fraction of available public\r\nsupercomputing resources devoted to these calculations. As we enter the\r\nexascale era, exciting new opportunities to increase simulation numbers, sizes,\r\nand accuracies present themselves. In order to realize these promises, the\r\ncommunity of electronic structure software developers will however first have\r\nto tackle a number of challenges pertaining to the efficient use of new\r\narchitectures that will rely heavily on massive parallelism and hardware\r\naccelerators. This roadmap provides a broad overview of the state-of-the-art in\r\nelectronic structure calculations and of the various new directions being\r\npursued by the community. It covers 14 electronic structure codes, presenting\r\ntheir current status, their development priorities over the next five years,\r\nand their plans towards tackling the challenges and leveraging the\r\nopportunities presented by the advent of exascale computing."}],"external_id":{"arxiv":["2209.12747"]},"title":"Roadmap on Electronic Structure Codes in the Exascale Era","user_id":"24135","author":[{"last_name":"Gavini","first_name":"Vikram","full_name":"Gavini, Vikram"},{"last_name":"Baroni","full_name":"Baroni, Stefano","first_name":"Stefano"},{"full_name":"Blum, Volker","first_name":"Volker","last_name":"Blum"},{"last_name":"Bowler","first_name":"David R.","full_name":"Bowler, David R."},{"last_name":"Buccheri","full_name":"Buccheri, Alexander","first_name":"Alexander"},{"last_name":"Chelikowsky","first_name":"James R.","full_name":"Chelikowsky, James R."},{"first_name":"Sambit","full_name":"Das, Sambit","last_name":"Das"},{"first_name":"William","full_name":"Dawson, William","last_name":"Dawson"},{"first_name":"Pietro","full_name":"Delugas, Pietro","last_name":"Delugas"},{"last_name":"Dogan","full_name":"Dogan, Mehmet","first_name":"Mehmet"},{"full_name":"Draxl, Claudia","first_name":"Claudia","last_name":"Draxl"},{"last_name":"Galli","full_name":"Galli, Giulia","first_name":"Giulia"},{"first_name":"Luigi","full_name":"Genovese, Luigi","last_name":"Genovese"},{"first_name":"Paolo","full_name":"Giannozzi, Paolo","last_name":"Giannozzi"},{"last_name":"Giantomassi","full_name":"Giantomassi, Matteo","first_name":"Matteo"},{"last_name":"Gonze","full_name":"Gonze, Xavier","first_name":"Xavier"},{"full_name":"Govoni, Marco","first_name":"Marco","last_name":"Govoni"},{"last_name":"Gulans","full_name":"Gulans, Andris","first_name":"Andris"},{"first_name":"François","full_name":"Gygi, François","last_name":"Gygi"},{"last_name":"Herbert","full_name":"Herbert, John M.","first_name":"John M."},{"full_name":"Kokott, Sebastian","first_name":"Sebastian","last_name":"Kokott"},{"full_name":"Kühne, Thomas","first_name":"Thomas","id":"49079","last_name":"Kühne"},{"last_name":"Liou","first_name":"Kai-Hsin","full_name":"Liou, Kai-Hsin"},{"last_name":"Miyazaki","full_name":"Miyazaki, Tsuyoshi","first_name":"Tsuyoshi"},{"full_name":"Motamarri, Phani","first_name":"Phani","last_name":"Motamarri"},{"last_name":"Nakata","first_name":"Ayako","full_name":"Nakata, Ayako"},{"first_name":"John E.","full_name":"Pask, John E.","last_name":"Pask"},{"first_name":"Christian","orcid":"0000-0001-5728-9982","full_name":"Plessl, Christian","last_name":"Plessl","id":"16153"},{"last_name":"Ratcliff","first_name":"Laura E.","full_name":"Ratcliff, Laura E."},{"last_name":"Richard","first_name":"Ryan M.","full_name":"Richard, Ryan M."},{"last_name":"Rossi","first_name":"Mariana","full_name":"Rossi, Mariana"},{"id":"75963","last_name":"Schade","orcid":"0000-0002-6268-539","full_name":"Schade, Robert","first_name":"Robert"},{"last_name":"Scheffler","full_name":"Scheffler, Matthias","first_name":"Matthias"},{"full_name":"Schütt, Ole","first_name":"Ole","last_name":"Schütt"},{"first_name":"Phanish","full_name":"Suryanarayana, Phanish","last_name":"Suryanarayana"},{"last_name":"Torrent","first_name":"Marc","full_name":"Torrent, Marc"},{"last_name":"Truflandier","full_name":"Truflandier, Lionel","first_name":"Lionel"},{"last_name":"Windus","full_name":"Windus, Theresa L.","first_name":"Theresa L."},{"full_name":"Xu, Qimen","first_name":"Qimen","last_name":"Xu"},{"last_name":"Yu","first_name":"Victor W. -Z.","full_name":"Yu, Victor W. -Z."},{"last_name":"Perez","first_name":"Danny","full_name":"Perez, Danny"}],"department":[{"_id":"27"},{"_id":"518"}],"publication":"arXiv:2209.12747","status":"public","date_created":"2022-09-28T05:25:10Z","project":[{"name":"PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing","_id":"52"}]},{"main_file_link":[{"open_access":"1","url":"https://dl.acm.org/doi/pdf/10.1145/3492805.3492808"}],"citation":{"apa":"Karp, M., Podobas, A., Kenter, T., Jansson, N., Plessl, C., Schlatter, P., & Markidis, S. (2022). A High-Fidelity Flow Solver for Unstructured Meshes on Field-Programmable Gate Arrays: Design, Evaluation, and Future Challenges. International Conference on High Performance Computing in Asia-Pacific Region. https://doi.org/10.1145/3492805.3492808","ama":"Karp M, Podobas A, Kenter T, et al. A High-Fidelity Flow Solver for Unstructured Meshes on Field-Programmable Gate Arrays: Design, Evaluation, and Future Challenges. In: International Conference on High Performance Computing in Asia-Pacific Region. ACM; 2022. doi:10.1145/3492805.3492808","chicago":"Karp, Martin, Artur Podobas, Tobias Kenter, Niclas Jansson, Christian Plessl, Philipp Schlatter, and Stefano Markidis. “A High-Fidelity Flow Solver for Unstructured Meshes on Field-Programmable Gate Arrays: Design, Evaluation, and Future Challenges.” In International Conference on High Performance Computing in Asia-Pacific Region. ACM, 2022. https://doi.org/10.1145/3492805.3492808.","mla":"Karp, Martin, et al. “A High-Fidelity Flow Solver for Unstructured Meshes on Field-Programmable Gate Arrays: Design, Evaluation, and Future Challenges.” International Conference on High Performance Computing in Asia-Pacific Region, ACM, 2022, doi:10.1145/3492805.3492808.","bibtex":"@inproceedings{Karp_Podobas_Kenter_Jansson_Plessl_Schlatter_Markidis_2022, title={A High-Fidelity Flow Solver for Unstructured Meshes on Field-Programmable Gate Arrays: Design, Evaluation, and Future Challenges}, DOI={10.1145/3492805.3492808}, booktitle={International Conference on High Performance Computing in Asia-Pacific Region}, publisher={ACM}, author={Karp, Martin and Podobas, Artur and Kenter, Tobias and Jansson, Niclas and Plessl, Christian and Schlatter, Philipp and Markidis, Stefano}, year={2022} }","short":"M. Karp, A. Podobas, T. Kenter, N. Jansson, C. Plessl, P. Schlatter, S. Markidis, in: International Conference on High Performance Computing in Asia-Pacific Region, ACM, 2022.","ieee":"M. Karp et al., “A High-Fidelity Flow Solver for Unstructured Meshes on Field-Programmable Gate Arrays: Design, Evaluation, and Future Challenges,” 2022, doi: 10.1145/3492805.3492808."},"type":"conference","year":"2022","language":[{"iso":"eng"}],"_id":"46193","date_updated":"2023-07-28T11:53:15Z","doi":"10.1145/3492805.3492808","oa":"1","quality_controlled":"1","publisher":"ACM","author":[{"last_name":"Karp","first_name":"Martin","full_name":"Karp, Martin"},{"last_name":"Podobas","full_name":"Podobas, Artur","first_name":"Artur"},{"full_name":"Kenter, Tobias","first_name":"Tobias","id":"3145","last_name":"Kenter"},{"last_name":"Jansson","full_name":"Jansson, Niclas","first_name":"Niclas"},{"full_name":"Plessl, Christian","orcid":"0000-0001-5728-9982","first_name":"Christian","id":"16153","last_name":"Plessl"},{"first_name":"Philipp","full_name":"Schlatter, Philipp","last_name":"Schlatter"},{"last_name":"Markidis","first_name":"Stefano","full_name":"Markidis, Stefano"}],"department":[{"_id":"27"},{"_id":"518"}],"publication":"International Conference on High Performance Computing in Asia-Pacific Region","publication_status":"published","status":"public","project":[{"_id":"52","name":"PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing"}],"date_created":"2023-07-28T11:51:55Z","title":"A High-Fidelity Flow Solver for Unstructured Meshes on Field-Programmable Gate Arrays: Design, Evaluation, and Future Challenges","user_id":"3145"},{"title":"CP2K on the road to exascale","user_id":"75963","abstract":[{"text":"The CP2K program package, which can be considered as the swiss army knife of\r\natomistic simulations, is presented with a special emphasis on ab-initio\r\nmolecular dynamics using the second-generation Car-Parrinello method. After\r\noutlining current and near-term development efforts with regards to massively\r\nparallel low-scaling post-Hartree-Fock and eigenvalue solvers, novel approaches\r\non how we plan to take full advantage of future low-precision hardware\r\narchitectures are introduced. Our focus here is on combining our submatrix\r\nmethod with the approximate computing paradigm to address the immanent exascale\r\nera.","lang":"eng"}],"external_id":{"arxiv":["2205.14741"]},"project":[{"_id":"52","name":"PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing"}],"date_created":"2022-07-22T08:14:08Z","status":"public","publication":"arXiv:2205.14741","department":[{"_id":"27"},{"_id":"518"},{"_id":"304"}],"author":[{"full_name":"Kühne, Thomas","first_name":"Thomas","id":"49079","last_name":"Kühne"},{"id":"16153","last_name":"Plessl","full_name":"Plessl, Christian","orcid":"0000-0001-5728-9982","first_name":"Christian"},{"first_name":"Robert","orcid":"0000-0002-6268-539","full_name":"Schade, Robert","last_name":"Schade","id":"75963"},{"full_name":"Schütt, Ole","first_name":"Ole","last_name":"Schütt"}],"date_updated":"2023-08-02T14:55:35Z","_id":"32404","year":"2022","citation":{"ieee":"T. Kühne, C. Plessl, R. Schade, and O. Schütt, “CP2K on the road to exascale,” arXiv:2205.14741. 2022.","short":"T. Kühne, C. Plessl, R. Schade, O. Schütt, ArXiv:2205.14741 (2022).","mla":"Kühne, Thomas, et al. “CP2K on the Road to Exascale.” ArXiv:2205.14741, 2022.","bibtex":"@article{Kühne_Plessl_Schade_Schütt_2022, title={CP2K on the road to exascale}, journal={arXiv:2205.14741}, author={Kühne, Thomas and Plessl, Christian and Schade, Robert and Schütt, Ole}, year={2022} }","apa":"Kühne, T., Plessl, C., Schade, R., & Schütt, O. (2022). CP2K on the road to exascale. In arXiv:2205.14741.","ama":"Kühne T, Plessl C, Schade R, Schütt O. CP2K on the road to exascale. arXiv:220514741. Published online 2022.","chicago":"Kühne, Thomas, Christian Plessl, Robert Schade, and Ole Schütt. “CP2K on the Road to Exascale.” ArXiv:2205.14741, 2022."},"type":"preprint","language":[{"iso":"eng"}],"main_file_link":[{"url":"https://arxiv.org/abs/2205.14741"}]},{"title":"Parallel quantum chemistry on noisy intermediate-scale quantum computers","publication_status":"published","project":[{"_id":"52","name":"PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing"}],"department":[{"_id":"27"},{"_id":"518"}],"doi":"10.1103/PhysRevResearch.4.033160","oa":"1","date_updated":"2023-08-02T15:04:22Z","language":[{"iso":"eng"}],"user_id":"75963","article_type":"original","abstract":[{"text":"A parallel hybrid quantum-classical algorithm for the solution of the quantum-chemical ground-state energy problem on gate-based quantum computers is presented. This approach is based on the reduced density-matrix functional theory (RDMFT) formulation of the electronic structure problem. For that purpose, the density-matrix functional of the full system is decomposed into an indirectly coupled sum of density-matrix functionals for all its subsystems using the adaptive cluster approximation to RDMFT. The approximations involved in the decomposition and the adaptive cluster approximation itself can be systematically converged to the exact result. The solutions for the density-matrix functionals of the effective subsystems involves a constrained minimization over many-particle states that are approximated by parametrized trial states on the quantum computer similarly to the variational quantum eigensolver. The independence of the density-matrix functionals of the effective subsystems introduces a new level of parallelization and allows for the computational treatment of much larger molecules on a quantum computer with a given qubit count. In addition, for the proposed algorithm techniques are presented to reduce the qubit count, the number of quantum programs, as well as its depth. The evaluation of a density-matrix functional as the essential part of our approach is demonstrated for Hubbard-like systems on IBM quantum computers based on superconducting transmon qubits.","lang":"eng"}],"volume":4,"status":"public","date_created":"2022-08-29T14:07:01Z","publisher":"American Physical Society","quality_controlled":"1","author":[{"last_name":"Schade","id":"75963","first_name":"Robert","orcid":"0000-0002-6268-539","full_name":"Schade, Robert"},{"id":"90082","last_name":"Bauer","full_name":"Bauer, Carsten","first_name":"Carsten"},{"last_name":"Tamoev","id":"50177","first_name":"Konstantin","full_name":"Tamoev, Konstantin"},{"first_name":"Lukas","full_name":"Mazur, Lukas","orcid":" 0000-0001-6304-7082","last_name":"Mazur","id":"90492"},{"orcid":"0000-0001-5728-9982","full_name":"Plessl, Christian","first_name":"Christian","id":"16153","last_name":"Plessl"},{"last_name":"Kühne","id":"49079","first_name":"Thomas","full_name":"Kühne, Thomas"}],"publication":"Phys. Rev. Research","_id":"33226","intvolume":" 4","year":"2022","citation":{"chicago":"Schade, Robert, Carsten Bauer, Konstantin Tamoev, Lukas Mazur, Christian Plessl, and Thomas Kühne. “Parallel Quantum Chemistry on Noisy Intermediate-Scale Quantum Computers.” Phys. Rev. Research 4 (2022): 033160. https://doi.org/10.1103/PhysRevResearch.4.033160.","apa":"Schade, R., Bauer, C., Tamoev, K., Mazur, L., Plessl, C., & Kühne, T. (2022). Parallel quantum chemistry on noisy intermediate-scale quantum computers. Phys. Rev. Research, 4, 033160. https://doi.org/10.1103/PhysRevResearch.4.033160","ama":"Schade R, Bauer C, Tamoev K, Mazur L, Plessl C, Kühne T. Parallel quantum chemistry on noisy intermediate-scale quantum computers. Phys Rev Research. 2022;4:033160. doi:10.1103/PhysRevResearch.4.033160","short":"R. Schade, C. Bauer, K. Tamoev, L. Mazur, C. Plessl, T. Kühne, Phys. Rev. Research 4 (2022) 033160.","bibtex":"@article{Schade_Bauer_Tamoev_Mazur_Plessl_Kühne_2022, title={Parallel quantum chemistry on noisy intermediate-scale quantum computers}, volume={4}, DOI={10.1103/PhysRevResearch.4.033160}, journal={Phys. Rev. Research}, publisher={American Physical Society}, author={Schade, Robert and Bauer, Carsten and Tamoev, Konstantin and Mazur, Lukas and Plessl, Christian and Kühne, Thomas}, year={2022}, pages={033160} }","mla":"Schade, Robert, et al. “Parallel Quantum Chemistry on Noisy Intermediate-Scale Quantum Computers.” Phys. Rev. Research, vol. 4, American Physical Society, 2022, p. 033160, doi:10.1103/PhysRevResearch.4.033160.","ieee":"R. Schade, C. Bauer, K. Tamoev, L. Mazur, C. Plessl, and T. Kühne, “Parallel quantum chemistry on noisy intermediate-scale quantum computers,” Phys. Rev. Research, vol. 4, p. 033160, 2022, doi: 10.1103/PhysRevResearch.4.033160."},"type":"journal_article","page":"033160","main_file_link":[{"open_access":"1","url":"https://journals.aps.org/prresearch/abstract/10.1103/PhysRevResearch.4.033160"}]},{"external_id":{"arxiv":["2209.12747"]},"abstract":[{"text":"Electronic structure calculations have been instrumental in providing many\r\nimportant insights into a range of physical and chemical properties of various\r\nmolecular and solid-state systems. Their importance to various fields,\r\nincluding materials science, chemical sciences, computational chemistry and\r\ndevice physics, is underscored by the large fraction of available public\r\nsupercomputing resources devoted to these calculations. As we enter the\r\nexascale era, exciting new opportunities to increase simulation numbers, sizes,\r\nand accuracies present themselves. In order to realize these promises, the\r\ncommunity of electronic structure software developers will however first have\r\nto tackle a number of challenges pertaining to the efficient use of new\r\narchitectures that will rely heavily on massive parallelism and hardware\r\naccelerators. This roadmap provides a broad overview of the state-of-the-art in\r\nelectronic structure calculations and of the various new directions being\r\npursued by the community. It covers 14 electronic structure codes, presenting\r\ntheir current status, their development priorities over the next five years,\r\nand their plans towards tackling the challenges and leveraging the\r\nopportunities presented by the advent of exascale computing.","lang":"eng"}],"user_id":"75963","title":"Roadmap on Electronic Structure Codes in the Exascale Era","author":[{"last_name":"Gavini","full_name":"Gavini, Vikram","first_name":"Vikram"},{"full_name":"Baroni, Stefano","first_name":"Stefano","last_name":"Baroni"},{"first_name":"Volker","full_name":"Blum, Volker","last_name":"Blum"},{"full_name":"Bowler, David R.","first_name":"David R.","last_name":"Bowler"},{"last_name":"Buccheri","first_name":"Alexander","full_name":"Buccheri, Alexander"},{"full_name":"Chelikowsky, James R.","first_name":"James R.","last_name":"Chelikowsky"},{"first_name":"Sambit","full_name":"Das, Sambit","last_name":"Das"},{"full_name":"Dawson, William","first_name":"William","last_name":"Dawson"},{"first_name":"Pietro","full_name":"Delugas, Pietro","last_name":"Delugas"},{"first_name":"Mehmet","full_name":"Dogan, Mehmet","last_name":"Dogan"},{"last_name":"Draxl","full_name":"Draxl, Claudia","first_name":"Claudia"},{"last_name":"Galli","first_name":"Giulia","full_name":"Galli, Giulia"},{"last_name":"Genovese","first_name":"Luigi","full_name":"Genovese, Luigi"},{"last_name":"Giannozzi","full_name":"Giannozzi, Paolo","first_name":"Paolo"},{"last_name":"Giantomassi","first_name":"Matteo","full_name":"Giantomassi, Matteo"},{"full_name":"Gonze, Xavier","first_name":"Xavier","last_name":"Gonze"},{"full_name":"Govoni, Marco","first_name":"Marco","last_name":"Govoni"},{"first_name":"Andris","full_name":"Gulans, Andris","last_name":"Gulans"},{"last_name":"Gygi","full_name":"Gygi, François","first_name":"François"},{"full_name":"Herbert, John M.","first_name":"John M.","last_name":"Herbert"},{"first_name":"Sebastian","full_name":"Kokott, Sebastian","last_name":"Kokott"},{"id":"49079","last_name":"Kühne","full_name":"Kühne, Thomas","first_name":"Thomas"},{"last_name":"Liou","first_name":"Kai-Hsin","full_name":"Liou, Kai-Hsin"},{"full_name":"Miyazaki, Tsuyoshi","first_name":"Tsuyoshi","last_name":"Miyazaki"},{"first_name":"Phani","full_name":"Motamarri, Phani","last_name":"Motamarri"},{"first_name":"Ayako","full_name":"Nakata, Ayako","last_name":"Nakata"},{"full_name":"Pask, John E.","first_name":"John E.","last_name":"Pask"},{"id":"16153","last_name":"Plessl","full_name":"Plessl, Christian","orcid":"0000-0001-5728-9982","first_name":"Christian"},{"last_name":"Ratcliff","first_name":"Laura E.","full_name":"Ratcliff, Laura E."},{"full_name":"Richard, Ryan M.","first_name":"Ryan M.","last_name":"Richard"},{"last_name":"Rossi","first_name":"Mariana","full_name":"Rossi, Mariana"},{"last_name":"Schade","id":"75963","first_name":"Robert","orcid":"0000-0002-6268-539","full_name":"Schade, Robert"},{"first_name":"Matthias","full_name":"Scheffler, Matthias","last_name":"Scheffler"},{"full_name":"Schütt, Ole","first_name":"Ole","last_name":"Schütt"},{"last_name":"Suryanarayana","first_name":"Phanish","full_name":"Suryanarayana, Phanish"},{"last_name":"Torrent","first_name":"Marc","full_name":"Torrent, Marc"},{"last_name":"Truflandier","first_name":"Lionel","full_name":"Truflandier, Lionel"},{"last_name":"Windus","full_name":"Windus, Theresa L.","first_name":"Theresa L."},{"last_name":"Xu","full_name":"Xu, Qimen","first_name":"Qimen"},{"full_name":"Yu, Victor W. -Z.","first_name":"Victor W. -Z.","last_name":"Yu"},{"last_name":"Perez","first_name":"Danny","full_name":"Perez, Danny"}],"publication":"arXiv:2209.12747","department":[{"_id":"27"}],"status":"public","date_created":"2023-08-02T14:59:18Z","project":[{"_id":"52","name":"PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing"}],"_id":"46275","date_updated":"2023-08-02T15:00:47Z","language":[{"iso":"eng"}],"citation":{"ieee":"V. Gavini et al., “Roadmap on Electronic Structure Codes in the Exascale Era,” arXiv:2209.12747. 2022.","short":"V. Gavini, S. Baroni, V. Blum, D.R. Bowler, A. Buccheri, J.R. Chelikowsky, S. Das, W. Dawson, P. Delugas, M. Dogan, C. Draxl, G. Galli, L. Genovese, P. Giannozzi, M. Giantomassi, X. Gonze, M. Govoni, A. Gulans, F. Gygi, J.M. Herbert, S. Kokott, T. Kühne, K.-H. Liou, T. Miyazaki, P. Motamarri, A. Nakata, J.E. Pask, C. Plessl, L.E. Ratcliff, R.M. Richard, M. Rossi, R. Schade, M. Scheffler, O. Schütt, P. Suryanarayana, M. Torrent, L. Truflandier, T.L. Windus, Q. Xu, V.W.-Z. Yu, D. Perez, ArXiv:2209.12747 (2022).","mla":"Gavini, Vikram, et al. “Roadmap on Electronic Structure Codes in the Exascale Era.” ArXiv:2209.12747, 2022.","bibtex":"@article{Gavini_Baroni_Blum_Bowler_Buccheri_Chelikowsky_Das_Dawson_Delugas_Dogan_et al._2022, title={Roadmap on Electronic Structure Codes in the Exascale Era}, journal={arXiv:2209.12747}, author={Gavini, Vikram and Baroni, Stefano and Blum, Volker and Bowler, David R. and Buccheri, Alexander and Chelikowsky, James R. and Das, Sambit and Dawson, William and Delugas, Pietro and Dogan, Mehmet and et al.}, year={2022} }","apa":"Gavini, V., Baroni, S., Blum, V., Bowler, D. R., Buccheri, A., Chelikowsky, J. R., Das, S., Dawson, W., Delugas, P., Dogan, M., Draxl, C., Galli, G., Genovese, L., Giannozzi, P., Giantomassi, M., Gonze, X., Govoni, M., Gulans, A., Gygi, F., … Perez, D. (2022). Roadmap on Electronic Structure Codes in the Exascale Era. In arXiv:2209.12747.","ama":"Gavini V, Baroni S, Blum V, et al. Roadmap on Electronic Structure Codes in the Exascale Era. arXiv:220912747. Published online 2022.","chicago":"Gavini, Vikram, Stefano Baroni, Volker Blum, David R. Bowler, Alexander Buccheri, James R. Chelikowsky, Sambit Das, et al. “Roadmap on Electronic Structure Codes in the Exascale Era.” ArXiv:2209.12747, 2022."},"year":"2022","type":"preprint"},{"user_id":"75963","volume":111,"date_created":"2022-10-11T08:17:02Z","status":"public","keyword":["Artificial Intelligence","Computer Graphics and Computer-Aided Design","Computer Networks and Communications","Hardware and Architecture","Theoretical Computer Science","Software"],"publication":"Parallel Computing","publisher":"Elsevier BV","author":[{"id":"75963","last_name":"Schade","orcid":"0000-0002-6268-539","full_name":"Schade, Robert","first_name":"Robert"},{"first_name":"Tobias","full_name":"Kenter, Tobias","last_name":"Kenter","id":"3145"},{"orcid":"0000-0002-4945-1481","full_name":"Elgabarty, Hossam","first_name":"Hossam","id":"60250","last_name":"Elgabarty"},{"id":"24135","last_name":"Lass","full_name":"Lass, Michael","orcid":"0000-0002-5708-7632","first_name":"Michael"},{"first_name":"Ole","full_name":"Schütt, Ole","last_name":"Schütt"},{"last_name":"Lazzaro","first_name":"Alfio","full_name":"Lazzaro, Alfio"},{"full_name":"Pabst, Hans","first_name":"Hans","last_name":"Pabst"},{"first_name":"Stephan","full_name":"Mohr, Stephan","last_name":"Mohr"},{"full_name":"Hutter, Jürg","first_name":"Jürg","last_name":"Hutter"},{"first_name":"Thomas","full_name":"Kühne, Thomas","last_name":"Kühne","id":"49079"},{"first_name":"Christian","orcid":"0000-0001-5728-9982","full_name":"Plessl, Christian","last_name":"Plessl","id":"16153"}],"quality_controlled":"1","article_number":"102920","intvolume":" 111","_id":"33684","citation":{"short":"R. Schade, T. Kenter, H. Elgabarty, M. Lass, O. Schütt, A. Lazzaro, H. Pabst, S. Mohr, J. Hutter, T. Kühne, C. Plessl, Parallel Computing 111 (2022).","ieee":"R. Schade et al., “Towards electronic structure-based ab-initio molecular dynamics simulations with hundreds of millions of atoms,” Parallel Computing, vol. 111, Art. no. 102920, 2022, doi: 10.1016/j.parco.2022.102920.","chicago":"Schade, Robert, Tobias Kenter, Hossam Elgabarty, Michael Lass, Ole Schütt, Alfio Lazzaro, Hans Pabst, et al. “Towards Electronic Structure-Based Ab-Initio Molecular Dynamics Simulations with Hundreds of Millions of Atoms.” Parallel Computing 111 (2022). https://doi.org/10.1016/j.parco.2022.102920.","apa":"Schade, R., Kenter, T., Elgabarty, H., Lass, M., Schütt, O., Lazzaro, A., Pabst, H., Mohr, S., Hutter, J., Kühne, T., & Plessl, C. (2022). Towards electronic structure-based ab-initio molecular dynamics simulations with hundreds of millions of atoms. Parallel Computing, 111, Article 102920. https://doi.org/10.1016/j.parco.2022.102920","ama":"Schade R, Kenter T, Elgabarty H, et al. Towards electronic structure-based ab-initio molecular dynamics simulations with hundreds of millions of atoms. Parallel Computing. 2022;111. doi:10.1016/j.parco.2022.102920","bibtex":"@article{Schade_Kenter_Elgabarty_Lass_Schütt_Lazzaro_Pabst_Mohr_Hutter_Kühne_et al._2022, title={Towards electronic structure-based ab-initio molecular dynamics simulations with hundreds of millions of atoms}, volume={111}, DOI={10.1016/j.parco.2022.102920}, number={102920}, journal={Parallel Computing}, publisher={Elsevier BV}, author={Schade, Robert and Kenter, Tobias and Elgabarty, Hossam and Lass, Michael and Schütt, Ole and Lazzaro, Alfio and Pabst, Hans and Mohr, Stephan and Hutter, Jürg and Kühne, Thomas and et al.}, year={2022} }","mla":"Schade, Robert, et al. “Towards Electronic Structure-Based Ab-Initio Molecular Dynamics Simulations with Hundreds of Millions of Atoms.” Parallel Computing, vol. 111, 102920, Elsevier BV, 2022, doi:10.1016/j.parco.2022.102920."},"year":"2022","type":"journal_article","main_file_link":[{"open_access":"1","url":"https://www.sciencedirect.com/science/article/pii/S0167819122000242"}],"title":"Towards electronic structure-based ab-initio molecular dynamics simulations with hundreds of millions of atoms","publication_identifier":{"issn":["0167-8191"]},"publication_status":"published","project":[{"name":"PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing","_id":"52"}],"department":[{"_id":"613"},{"_id":"27"},{"_id":"518"}],"doi":"10.1016/j.parco.2022.102920","oa":"1","date_updated":"2023-08-02T15:03:55Z","language":[{"iso":"eng"}]},{"doi":"10.1016/j.jpdc.2021.10.007","_id":"27364","date_updated":"2023-09-26T10:26:56Z","year":"2022","citation":{"ama":"Meyer M, Kenter T, Plessl C. In-depth FPGA Accelerator Performance Evaluation with Single Node Benchmarks from the HPC Challenge Benchmark Suite for Intel and Xilinx FPGAs using OpenCL. Journal of Parallel and Distributed Computing. Published online 2022. doi:10.1016/j.jpdc.2021.10.007","apa":"Meyer, M., Kenter, T., & Plessl, C. (2022). In-depth FPGA Accelerator Performance Evaluation with Single Node Benchmarks from the HPC Challenge Benchmark Suite for Intel and Xilinx FPGAs using OpenCL. Journal of Parallel and Distributed Computing. https://doi.org/10.1016/j.jpdc.2021.10.007","chicago":"Meyer, Marius, Tobias Kenter, and Christian Plessl. “In-Depth FPGA Accelerator Performance Evaluation with Single Node Benchmarks from the HPC Challenge Benchmark Suite for Intel and Xilinx FPGAs Using OpenCL.” Journal of Parallel and Distributed Computing, 2022. https://doi.org/10.1016/j.jpdc.2021.10.007.","mla":"Meyer, Marius, et al. “In-Depth FPGA Accelerator Performance Evaluation with Single Node Benchmarks from the HPC Challenge Benchmark Suite for Intel and Xilinx FPGAs Using OpenCL.” Journal of Parallel and Distributed Computing, 2022, doi:10.1016/j.jpdc.2021.10.007.","bibtex":"@article{Meyer_Kenter_Plessl_2022, title={In-depth FPGA Accelerator Performance Evaluation with Single Node Benchmarks from the HPC Challenge Benchmark Suite for Intel and Xilinx FPGAs using OpenCL}, DOI={10.1016/j.jpdc.2021.10.007}, journal={Journal of Parallel and Distributed Computing}, author={Meyer, Marius and Kenter, Tobias and Plessl, Christian}, year={2022} }","short":"M. Meyer, T. Kenter, C. Plessl, Journal of Parallel and Distributed Computing (2022).","ieee":"M. Meyer, T. Kenter, and C. Plessl, “In-depth FPGA Accelerator Performance Evaluation with Single Node Benchmarks from the HPC Challenge Benchmark Suite for Intel and Xilinx FPGAs using OpenCL,” Journal of Parallel and Distributed Computing, 2022, doi: 10.1016/j.jpdc.2021.10.007."},"type":"journal_article","language":[{"iso":"eng"}],"title":"In-depth FPGA Accelerator Performance Evaluation with Single Node Benchmarks from the HPC Challenge Benchmark Suite for Intel and Xilinx FPGAs using OpenCL","user_id":"15278","publication_status":"published","publication_identifier":{"issn":["0743-7315"]},"status":"public","project":[{"name":"Computing Resources Provided by the Paderborn Center for Parallel Computing","_id":"52"}],"date_created":"2021-11-10T14:36:27Z","author":[{"first_name":"Marius","full_name":"Meyer, Marius","last_name":"Meyer","id":"40778"},{"id":"3145","last_name":"Kenter","full_name":"Kenter, Tobias","first_name":"Tobias"},{"first_name":"Christian","full_name":"Plessl, Christian","orcid":"0000-0001-5728-9982","last_name":"Plessl","id":"16153"}],"quality_controlled":"1","publication":"Journal of Parallel and Distributed Computing","department":[{"_id":"27"},{"_id":"518"}]},{"date_created":"2024-01-04T08:15:28Z","project":[{"name":"PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing","_id":"52"}],"status":"public","publication":"Physical Review B 107, 214310 (2023)","department":[{"_id":"27"}],"author":[{"last_name":"Moroder","first_name":"Mattia","full_name":"Moroder, Mattia"},{"last_name":"Grundner","full_name":"Grundner, Martin","first_name":"Martin"},{"last_name":"Damanet","full_name":"Damanet, François","first_name":"François"},{"last_name":"Schollwöck","first_name":"Ulrich","full_name":"Schollwöck, Ulrich"},{"last_name":"Mardazad","full_name":"Mardazad, Sam","first_name":"Sam"},{"full_name":"Flannigan, Stuart","first_name":"Stuart","last_name":"Flannigan"},{"last_name":"Köhler","full_name":"Köhler, Thomas","first_name":"Thomas"},{"last_name":"Paeckel","first_name":"Sebastian","full_name":"Paeckel, Sebastian"}],"title":"Stable bipolarons in open quantum systems","user_id":"67287","abstract":[{"lang":"eng","text":"Recent advances in numerical methods significantly pushed forward the\r\nunderstanding of electrons coupled to quantized lattice vibrations. At this\r\nstage, it becomes increasingly important to also account for the effects of\r\nphysically inevitable environments. In particular, we study the transport\r\nproperties of the Hubbard-Holstein Hamiltonian that models a large class of\r\nmaterials characterized by strong electron-phonon coupling, in contact with a\r\ndissipative environment. Even in the one-dimensional and isolated case,\r\nsimulating the quantum dynamics of such a system with high accuracy is very\r\nchallenging due to the infinite dimensionality of the phononic Hilbert spaces.\r\nFor this reason, the effects of dissipation on the conductance properties of\r\nsuch systems have not been investigated systematically so far. We combine the\r\nnon-Markovian hierarchy of pure states method and the Markovian quantum jumps\r\nmethod with the newly introduced projected purified density-matrix\r\nrenormalization group, creating powerful tensor-network methods for dissipative\r\nquantum many-body systems. Investigating their numerical properties, we find a\r\nsignificant speedup up to a factor $\\sim 30$ compared to conventional\r\ntensor-network techniques. We apply these methods to study dissipative\r\nquenches, aiming for an in-depth understanding of the formation, stability, and\r\nquasi-particle properties of bipolarons. Surprisingly, our results show that in\r\nthe metallic phase dissipation localizes the bipolarons, which is reminiscent\r\nof an indirect quantum Zeno effect. However, the bipolaronic binding energy\r\nremains mainly unaffected, even in the presence of strong dissipation,\r\nexhibiting remarkable bipolaron stability. These findings shed light on the\r\nproblem of designing real materials exhibiting phonon-mediated\r\nhigh-$T_\\mathrm{C}$ superconductivity."}],"external_id":{"arxiv":["2207.08243"]},"type":"journal_article","year":"2022","citation":{"ama":"Moroder M, Grundner M, Damanet F, et al. Stable bipolarons in open quantum systems. Physical Review B 107, 214310 (2023). Published online 2022. doi:10.1103/PhysRevB.107.214310","apa":"Moroder, M., Grundner, M., Damanet, F., Schollwöck, U., Mardazad, S., Flannigan, S., Köhler, T., & Paeckel, S. (2022). Stable bipolarons in open quantum systems. Physical Review B 107, 214310 (2023). https://doi.org/10.1103/PhysRevB.107.214310","chicago":"Moroder, Mattia, Martin Grundner, François Damanet, Ulrich Schollwöck, Sam Mardazad, Stuart Flannigan, Thomas Köhler, and Sebastian Paeckel. “Stable Bipolarons in Open Quantum Systems.” Physical Review B 107, 214310 (2023), 2022. https://doi.org/10.1103/PhysRevB.107.214310.","bibtex":"@article{Moroder_Grundner_Damanet_Schollwöck_Mardazad_Flannigan_Köhler_Paeckel_2022, title={Stable bipolarons in open quantum systems}, DOI={10.1103/PhysRevB.107.214310}, journal={Physical Review B 107, 214310 (2023)}, author={Moroder, Mattia and Grundner, Martin and Damanet, François and Schollwöck, Ulrich and Mardazad, Sam and Flannigan, Stuart and Köhler, Thomas and Paeckel, Sebastian}, year={2022} }","mla":"Moroder, Mattia, et al. “Stable Bipolarons in Open Quantum Systems.” Physical Review B 107, 214310 (2023), 2022, doi:10.1103/PhysRevB.107.214310.","short":"M. Moroder, M. Grundner, F. Damanet, U. Schollwöck, S. Mardazad, S. Flannigan, T. Köhler, S. Paeckel, Physical Review B 107, 214310 (2023) (2022).","ieee":"M. Moroder et al., “Stable bipolarons in open quantum systems,” Physical Review B 107, 214310 (2023), 2022, doi: 10.1103/PhysRevB.107.214310."},"language":[{"iso":"eng"}],"doi":"10.1103/PhysRevB.107.214310","date_updated":"2024-01-04T08:15:53Z","_id":"50146"},{"doi":"10.1103/PhysRevC.107.034905","_id":"50148","date_updated":"2024-01-04T08:18:45Z","language":[{"iso":"eng"}],"type":"journal_article","year":"2022","citation":{"chicago":"Borghini, Nicolas, Marc Borrell, Nina Feld, Hendrik Roch, Sören Schlichting, and Clemens Werthmann. “Statistical Analysis of Initial State and Final State Response in Heavy-Ion Collisions.” Phys. Rev. C 107 (2023) 034905, 2022. https://doi.org/10.1103/PhysRevC.107.034905.","apa":"Borghini, N., Borrell, M., Feld, N., Roch, H., Schlichting, S., & Werthmann, C. (2022). Statistical analysis of initial state and final state response in heavy-ion collisions. Phys. Rev. C 107 (2023) 034905. https://doi.org/10.1103/PhysRevC.107.034905","ama":"Borghini N, Borrell M, Feld N, Roch H, Schlichting S, Werthmann C. Statistical analysis of initial state and final state response in heavy-ion collisions. Phys Rev C 107 (2023) 034905. Published online 2022. doi:10.1103/PhysRevC.107.034905","mla":"Borghini, Nicolas, et al. “Statistical Analysis of Initial State and Final State Response in Heavy-Ion Collisions.” Phys. Rev. C 107 (2023) 034905, 2022, doi:10.1103/PhysRevC.107.034905.","bibtex":"@article{Borghini_Borrell_Feld_Roch_Schlichting_Werthmann_2022, title={Statistical analysis of initial state and final state response in heavy-ion collisions}, DOI={10.1103/PhysRevC.107.034905}, journal={Phys. Rev. C 107 (2023) 034905}, author={Borghini, Nicolas and Borrell, Marc and Feld, Nina and Roch, Hendrik and Schlichting, Sören and Werthmann, Clemens}, year={2022} }","short":"N. Borghini, M. Borrell, N. Feld, H. Roch, S. Schlichting, C. Werthmann, Phys. Rev. C 107 (2023) 034905 (2022).","ieee":"N. Borghini, M. Borrell, N. Feld, H. Roch, S. Schlichting, and C. Werthmann, “Statistical analysis of initial state and final state response in heavy-ion collisions,” Phys. Rev. C 107 (2023) 034905, 2022, doi: 10.1103/PhysRevC.107.034905."},"user_id":"67287","title":"Statistical analysis of initial state and final state response in heavy-ion collisions","external_id":{"arxiv":["2209.01176"]},"abstract":[{"lang":"eng","text":"We develop a general decomposition of an ensemble of initial density profiles\r\nin terms of an average state and a basis of modes that represent the\r\nevent-by-event fluctuations of the initial state. The basis is determined such\r\nthat the probability distributions of the amplitudes of different modes are\r\nuncorrelated. Based on this decomposition, we quantify the different types and\r\nprobabilities of event-by-event fluctuations in Glauber and Saturation models\r\nand investigate how the various modes affect different characteristics of the\r\ninitial state. We perform simulations of the dynamical evolution with KoMPoST\r\nand MUSIC to investigate the impact of the modes on final-state observables and\r\ntheir correlations."}],"project":[{"name":"PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing","_id":"52"}],"date_created":"2024-01-04T08:18:29Z","status":"public","department":[{"_id":"27"}],"publication":"Phys. Rev. C 107 (2023) 034905","author":[{"full_name":"Borghini, Nicolas","first_name":"Nicolas","last_name":"Borghini"},{"full_name":"Borrell, Marc","first_name":"Marc","last_name":"Borrell"},{"full_name":"Feld, Nina","first_name":"Nina","last_name":"Feld"},{"first_name":"Hendrik","full_name":"Roch, Hendrik","last_name":"Roch"},{"last_name":"Schlichting","full_name":"Schlichting, Sören","first_name":"Sören"},{"last_name":"Werthmann","first_name":"Clemens","full_name":"Werthmann, Clemens"}]},{"page":"9966-9983","type":"journal_article","citation":{"ama":"Lesch E, Schilling MT, Brenner S, et al. Plant mitochondrial RNA editing factors can perform targeted C-to-U editing of nuclear transcripts in human cells. Nucleic Acids Research. 2022;50(17):9966-9983. doi:10.1093/nar/gkac752","apa":"Lesch, E., Schilling, M. T., Brenner, S., Yang, Y., Gruss, O. J., Knoop, V., & Schallenberg-Rüdinger, M. (2022). Plant mitochondrial RNA editing factors can perform targeted C-to-U editing of nuclear transcripts in human cells. Nucleic Acids Research, 50(17), 9966–9983. https://doi.org/10.1093/nar/gkac752","chicago":"Lesch, Elena, Maximilian T Schilling, Sarah Brenner, Yingying Yang, Oliver J Gruss, Volker Knoop, and Mareike Schallenberg-Rüdinger. “Plant Mitochondrial RNA Editing Factors Can Perform Targeted C-to-U Editing of Nuclear Transcripts in Human Cells.” Nucleic Acids Research 50, no. 17 (2022): 9966–83. https://doi.org/10.1093/nar/gkac752.","bibtex":"@article{Lesch_Schilling_Brenner_Yang_Gruss_Knoop_Schallenberg-Rüdinger_2022, title={Plant mitochondrial RNA editing factors can perform targeted C-to-U editing of nuclear transcripts in human cells}, volume={50}, DOI={10.1093/nar/gkac752}, number={17}, journal={Nucleic Acids Research}, publisher={Oxford University Press (OUP)}, author={Lesch, Elena and Schilling, Maximilian T and Brenner, Sarah and Yang, Yingying and Gruss, Oliver J and Knoop, Volker and Schallenberg-Rüdinger, Mareike}, year={2022}, pages={9966–9983} }","mla":"Lesch, Elena, et al. “Plant Mitochondrial RNA Editing Factors Can Perform Targeted C-to-U Editing of Nuclear Transcripts in Human Cells.” Nucleic Acids Research, vol. 50, no. 17, Oxford University Press (OUP), 2022, pp. 9966–83, doi:10.1093/nar/gkac752.","short":"E. Lesch, M.T. Schilling, S. Brenner, Y. Yang, O.J. Gruss, V. Knoop, M. Schallenberg-Rüdinger, Nucleic Acids Research 50 (2022) 9966–9983.","ieee":"E. Lesch et al., “Plant mitochondrial RNA editing factors can perform targeted C-to-U editing of nuclear transcripts in human cells,” Nucleic Acids Research, vol. 50, no. 17, pp. 9966–9983, 2022, doi: 10.1093/nar/gkac752."},"year":"2022","issue":"17","intvolume":" 50","_id":"50149","volume":50,"date_created":"2024-01-04T08:23:01Z","status":"public","keyword":["Genetics"],"publication":"Nucleic Acids Research","publisher":"Oxford University Press (OUP)","author":[{"last_name":"Lesch","full_name":"Lesch, Elena","first_name":"Elena"},{"last_name":"Schilling","full_name":"Schilling, Maximilian T","first_name":"Maximilian T"},{"last_name":"Brenner","full_name":"Brenner, Sarah","first_name":"Sarah"},{"last_name":"Yang","full_name":"Yang, Yingying","first_name":"Yingying"},{"first_name":"Oliver J","full_name":"Gruss, Oliver J","last_name":"Gruss"},{"last_name":"Knoop","full_name":"Knoop, Volker","first_name":"Volker"},{"last_name":"Schallenberg-Rüdinger","first_name":"Mareike","full_name":"Schallenberg-Rüdinger, Mareike"}],"user_id":"67287","abstract":[{"lang":"eng","text":"Abstract\r\n RNA editing processes are strikingly different in animals and plants. Up to thousands of specific cytidines are converted into uridines in plant chloroplasts and mitochondria whereas up to millions of adenosines are converted into inosines in animal nucleo-cytosolic RNAs. It is unknown whether these two different RNA editing machineries are mutually incompatible. RNA-binding pentatricopeptide repeat (PPR) proteins are the key factors of plant organelle cytidine-to-uridine RNA editing. The complete absence of PPR mediated editing of cytosolic RNAs might be due to a yet unknown barrier that prevents its activity in the cytosol. Here, we transferred two plant mitochondrial PPR-type editing factors into human cell lines to explore whether they could operate in the nucleo-cytosolic environment. PPR56 and PPR65 not only faithfully edited their native, co-transcribed targets but also different sets of off-targets in the human background transcriptome. More than 900 of such off-targets with editing efficiencies up to 91%, largely explained by known PPR-RNA binding properties, were identified for PPR56. Engineering two crucial amino acid positions in its PPR array led to predictable shifts in target recognition. We conclude that plant PPR editing factors can operate in the entirely different genetic environment of the human nucleo-cytosol and can be intentionally re-engineered towards new targets."}],"language":[{"iso":"eng"}],"doi":"10.1093/nar/gkac752","date_updated":"2024-01-04T08:23:13Z","publication_status":"published","publication_identifier":{"issn":["0305-1048","1362-4962"]},"project":[{"_id":"52","name":"PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing"}],"department":[{"_id":"27"}],"title":"Plant mitochondrial RNA editing factors can perform targeted C-to-U editing of nuclear transcripts in human cells"},{"user_id":"3145","abstract":[{"text":"N-body methods are one of the essential algorithmic building blocks of high-performance and parallel computing. Previous research has shown promising performance for implementing n-body simulations with pairwise force calculations on FPGAs. However, to avoid challenges with accumulation and memory access patterns, the presented designs calculate each pair of forces twice, along with both force sums of the involved particles. Also, they require large problem instances with hundreds of thousands of particles to reach their respective peak performance, limiting the applicability for strong scaling scenarios. This work addresses both issues by presenting a novel FPGA design that uses each calculated force twice and overlaps data transfers and computations in a way that allows to reach peak performance even for small problem instances, outperforming previous single precision results even in double precision, and scaling linearly over multiple interconnected FPGAs. For a comparison across architectures, we provide an equally optimized CPU reference, which for large problems actually achieves higher peak performance per device, however, given the strong scaling advantages of the FPGA design, in parallel setups with few thousand particles per device, the FPGA platform achieves highest performance and power efficiency.","lang":"eng"}],"article_type":"original","volume":15,"date_created":"2021-11-30T10:00:31Z","status":"public","publication":"ACM Transactions on Reconfigurable Technology and Systems","quality_controlled":"1","author":[{"first_name":"Johannes","full_name":"Menzel, Johannes","last_name":"Menzel"},{"id":"16153","last_name":"Plessl","full_name":"Plessl, Christian","orcid":"0000-0001-5728-9982","first_name":"Christian"},{"full_name":"Kenter, Tobias","first_name":"Tobias","id":"3145","last_name":"Kenter"}],"issue":"1","intvolume":" 15","_id":"28099","page":"1-30","citation":{"bibtex":"@article{Menzel_Plessl_Kenter_2021, title={The Strong Scaling Advantage of FPGAs in HPC for N-body Simulations}, volume={15}, DOI={10.1145/3491235}, number={1}, journal={ACM Transactions on Reconfigurable Technology and Systems}, author={Menzel, Johannes and Plessl, Christian and Kenter, Tobias}, year={2021}, pages={1–30} }","mla":"Menzel, Johannes, et al. “The Strong Scaling Advantage of FPGAs in HPC for N-Body Simulations.” ACM Transactions on Reconfigurable Technology and Systems, vol. 15, no. 1, 2021, pp. 1–30, doi:10.1145/3491235.","ama":"Menzel J, Plessl C, Kenter T. The Strong Scaling Advantage of FPGAs in HPC for N-body Simulations. ACM Transactions on Reconfigurable Technology and Systems. 2021;15(1):1-30. doi:10.1145/3491235","apa":"Menzel, J., Plessl, C., & Kenter, T. (2021). The Strong Scaling Advantage of FPGAs in HPC for N-body Simulations. ACM Transactions on Reconfigurable Technology and Systems, 15(1), 1–30. https://doi.org/10.1145/3491235","chicago":"Menzel, Johannes, Christian Plessl, and Tobias Kenter. “The Strong Scaling Advantage of FPGAs in HPC for N-Body Simulations.” ACM Transactions on Reconfigurable Technology and Systems 15, no. 1 (2021): 1–30. https://doi.org/10.1145/3491235.","ieee":"J. Menzel, C. Plessl, and T. Kenter, “The Strong Scaling Advantage of FPGAs in HPC for N-body Simulations,” ACM Transactions on Reconfigurable Technology and Systems, vol. 15, no. 1, pp. 1–30, 2021, doi: 10.1145/3491235.","short":"J. Menzel, C. Plessl, T. Kenter, ACM Transactions on Reconfigurable Technology and Systems 15 (2021) 1–30."},"year":"2021","type":"journal_article","main_file_link":[{"url":"https://dl.acm.org/doi/10.1145/3491235","open_access":"1"}],"title":"The Strong Scaling Advantage of FPGAs in HPC for N-body Simulations","publication_identifier":{"issn":["1936-7406","1936-7414"]},"publication_status":"published","department":[{"_id":"27"},{"_id":"518"}],"doi":"10.1145/3491235","oa":"1","date_updated":"2022-01-06T06:57:51Z","language":[{"iso":"eng"}]},{"language":[{"iso":"eng"}],"year":"2021","type":"conference","citation":{"ieee":"M. Meyer, “Towards Performance Characterization of FPGAs in Context of HPC using OpenCL Benchmarks,” 2021, doi: 10.1145/3468044.3468058.","short":"M. Meyer, in: Proceedings of the 11th International Symposium on Highly Efficient Accelerators and Reconfigurable Technologies, 2021.","bibtex":"@inproceedings{Meyer_2021, title={Towards Performance Characterization of FPGAs in Context of HPC using OpenCL Benchmarks}, DOI={10.1145/3468044.3468058}, booktitle={Proceedings of the 11th International Symposium on Highly Efficient Accelerators and Reconfigurable Technologies}, author={Meyer, Marius}, year={2021} }","mla":"Meyer, Marius. “Towards Performance Characterization of FPGAs in Context of HPC Using OpenCL Benchmarks.” Proceedings of the 11th International Symposium on Highly Efficient Accelerators and Reconfigurable Technologies, 2021, doi:10.1145/3468044.3468058.","chicago":"Meyer, Marius. “Towards Performance Characterization of FPGAs in Context of HPC Using OpenCL Benchmarks.” In Proceedings of the 11th International Symposium on Highly Efficient Accelerators and Reconfigurable Technologies, 2021. https://doi.org/10.1145/3468044.3468058.","apa":"Meyer, M. (2021). Towards Performance Characterization of FPGAs in Context of HPC using OpenCL Benchmarks. Proceedings of the 11th International Symposium on Highly Efficient Accelerators and Reconfigurable Technologies. https://doi.org/10.1145/3468044.3468058","ama":"Meyer M. Towards Performance Characterization of FPGAs in Context of HPC using OpenCL Benchmarks. In: Proceedings of the 11th International Symposium on Highly Efficient Accelerators and Reconfigurable Technologies. ; 2021. doi:10.1145/3468044.3468058"},"doi":"10.1145/3468044.3468058","date_updated":"2022-01-06T06:57:38Z","_id":"27365","status":"public","date_created":"2021-11-10T14:42:17Z","project":[{"name":"Computing Resources Provided by the Paderborn Center for Parallel Computing","_id":"52"}],"publication_status":"published","author":[{"last_name":"Meyer","id":"40778","first_name":"Marius","full_name":"Meyer, Marius"}],"publication":"Proceedings of the 11th International Symposium on Highly Efficient Accelerators and Reconfigurable Technologies","department":[{"_id":"27"}],"user_id":"40778","title":"Towards Performance Characterization of FPGAs in Context of HPC using OpenCL Benchmarks"},{"_id":"20886","date_updated":"2022-01-06T06:54:41Z","conference":{"end_date":"2021-09-01","name":"IEEE/CVF Winter Conference on Applications of Computer Vision","start_date":"2021-05-01","location":"Hawaii"},"language":[{"iso":"eng"}],"type":"conference","year":"2021","citation":{"bibtex":"@inproceedings{Nickchen_Heindorf_Engels_2021, title={Generating Physically Sound Training Data for Image Recognition of Additively Manufactured Parts}, booktitle={Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision}, author={Nickchen, Tobias and Heindorf, Stefan and Engels, Gregor}, year={2021}, pages={1994–2002} }","mla":"Nickchen, Tobias, et al. “Generating Physically Sound Training Data for Image Recognition of Additively Manufactured Parts.” Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision, 2021, pp. 1994–2002.","ama":"Nickchen T, Heindorf S, Engels G. Generating Physically Sound Training Data for Image Recognition of Additively Manufactured Parts. In: Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision. ; 2021:1994-2002.","apa":"Nickchen, T., Heindorf, S., & Engels, G. (2021). Generating Physically Sound Training Data for Image Recognition of Additively Manufactured Parts. In Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision (pp. 1994–2002). Hawaii.","chicago":"Nickchen, Tobias, Stefan Heindorf, and Gregor Engels. “Generating Physically Sound Training Data for Image Recognition of Additively Manufactured Parts.” In Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision, 1994–2002, 2021.","ieee":"T. Nickchen, S. Heindorf, and G. Engels, “Generating Physically Sound Training Data for Image Recognition of Additively Manufactured Parts,” in Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision, Hawaii, 2021, pp. 1994–2002.","short":"T. Nickchen, S. Heindorf, G. Engels, in: Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision, 2021, pp. 1994–2002."},"page":"1994-2002","user_id":"27340","title":"Generating Physically Sound Training Data for Image Recognition of Additively Manufactured Parts","status":"public","date_created":"2021-01-07T15:32:45Z","publication_status":"published","author":[{"full_name":"Nickchen, Tobias","first_name":"Tobias","last_name":"Nickchen"},{"full_name":"Heindorf, Stefan","first_name":"Stefan","last_name":"Heindorf"},{"last_name":"Engels","first_name":"Gregor","full_name":"Engels, Gregor"}],"publication":"Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision","department":[{"_id":"66"},{"_id":"534"},{"_id":"624"},{"_id":"219"},{"_id":"27"}]},{"status":"public","date_created":"2022-06-28T07:27:41Z","volume":2021,"author":[{"last_name":"Dabelow","full_name":"Dabelow, Lennart","first_name":"Lennart"},{"first_name":"Stefano","full_name":"Bo, Stefano","last_name":"Bo"},{"full_name":"Eichhorn, Ralf","first_name":"Ralf","last_name":"Eichhorn"}],"publisher":"IOP Publishing","keyword":["Statistics","Probability and Uncertainty","Statistics and Probability","Statistical and Nonlinear Physics"],"publication":"Journal of Statistical Mechanics: Theory and Experiment","user_id":"15278","abstract":[{"lang":"eng","text":"Abstract\r\n The defining feature of active particles is that they constantly propel themselves by locally converting chemical energy into directed motion. This active self-propulsion prevents them from equilibrating with their thermal environment (e.g. an aqueous solution), thus keeping them permanently out of equilibrium. Nevertheless, the spatial dynamics of active particles might share certain equilibrium features, in particular in the steady state. We here focus on the time-reversal symmetry of individual spatial trajectories as a distinct equilibrium characteristic. We investigate to what extent the steady-state trajectories of a trapped active particle obey or break this time-reversal symmetry. Within the framework of active Ornstein–Uhlenbeck particles we find that the steady-state trajectories in a harmonic potential fulfill path-wise time-reversal symmetry exactly, while this symmetry is typically broken in anharmonic potentials."}],"year":"2021","citation":{"apa":"Dabelow, L., Bo, S., & Eichhorn, R. (2021). How irreversible are steady-state trajectories of a trapped active particle? Journal of Statistical Mechanics: Theory and Experiment, 2021(3), Article 033216. https://doi.org/10.1088/1742-5468/abe6fd","ama":"Dabelow L, Bo S, Eichhorn R. How irreversible are steady-state trajectories of a trapped active particle? Journal of Statistical Mechanics: Theory and Experiment. 2021;2021(3). doi:10.1088/1742-5468/abe6fd","chicago":"Dabelow, Lennart, Stefano Bo, and Ralf Eichhorn. “How Irreversible Are Steady-State Trajectories of a Trapped Active Particle?” Journal of Statistical Mechanics: Theory and Experiment 2021, no. 3 (2021). https://doi.org/10.1088/1742-5468/abe6fd.","mla":"Dabelow, Lennart, et al. “How Irreversible Are Steady-State Trajectories of a Trapped Active Particle?” Journal of Statistical Mechanics: Theory and Experiment, vol. 2021, no. 3, 033216, IOP Publishing, 2021, doi:10.1088/1742-5468/abe6fd.","bibtex":"@article{Dabelow_Bo_Eichhorn_2021, title={How irreversible are steady-state trajectories of a trapped active particle?}, volume={2021}, DOI={10.1088/1742-5468/abe6fd}, number={3033216}, journal={Journal of Statistical Mechanics: Theory and Experiment}, publisher={IOP Publishing}, author={Dabelow, Lennart and Bo, Stefano and Eichhorn, Ralf}, year={2021} }","short":"L. Dabelow, S. Bo, R. Eichhorn, Journal of Statistical Mechanics: Theory and Experiment 2021 (2021).","ieee":"L. Dabelow, S. Bo, and R. Eichhorn, “How irreversible are steady-state trajectories of a trapped active particle?,” Journal of Statistical Mechanics: Theory and Experiment, vol. 2021, no. 3, Art. no. 033216, 2021, doi: 10.1088/1742-5468/abe6fd."},"type":"journal_article","issue":"3","article_number":"033216","_id":"32243","intvolume":" 2021","project":[{"name":"PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing","_id":"52"}],"publication_status":"published","publication_identifier":{"issn":["1742-5468"]},"department":[{"_id":"27"}],"title":"How irreversible are steady-state trajectories of a trapped active particle?","language":[{"iso":"eng"}],"doi":"10.1088/1742-5468/abe6fd","date_updated":"2022-06-28T07:28:14Z"},{"year":"2021","type":"preprint","citation":{"short":"R. Schade, T. Kenter, H. Elgabarty, M. Lass, O. Schütt, A. Lazzaro, H. Pabst, S. Mohr, J. Hutter, T.D. Kühne, C. Plessl, ArXiv:2104.08245 (2021).","ieee":"R. Schade et al., “Towards Electronic Structure-Based Ab-Initio Molecular Dynamics Simulations with Hundreds of Millions of Atoms,” arXiv:2104.08245. 2021.","chicago":"Schade, Robert, Tobias Kenter, Hossam Elgabarty, Michael Lass, Ole Schütt, Alfio Lazzaro, Hans Pabst, et al. “Towards Electronic Structure-Based Ab-Initio Molecular Dynamics Simulations with Hundreds of Millions of Atoms.” ArXiv:2104.08245, 2021.","apa":"Schade, R., Kenter, T., Elgabarty, H., Lass, M., Schütt, O., Lazzaro, A., Pabst, H., Mohr, S., Hutter, J., Kühne, T. D., & Plessl, C. (2021). Towards Electronic Structure-Based Ab-Initio Molecular Dynamics Simulations with Hundreds of Millions of Atoms. In arXiv:2104.08245.","ama":"Schade R, Kenter T, Elgabarty H, et al. Towards Electronic Structure-Based Ab-Initio Molecular Dynamics Simulations with Hundreds of Millions of Atoms. arXiv:210408245. Published online 2021.","mla":"Schade, Robert, et al. “Towards Electronic Structure-Based Ab-Initio Molecular Dynamics Simulations with Hundreds of Millions of Atoms.” ArXiv:2104.08245, 2021.","bibtex":"@article{Schade_Kenter_Elgabarty_Lass_Schütt_Lazzaro_Pabst_Mohr_Hutter_Kühne_et al._2021, title={Towards Electronic Structure-Based Ab-Initio Molecular Dynamics Simulations with Hundreds of Millions of Atoms}, journal={arXiv:2104.08245}, author={Schade, Robert and Kenter, Tobias and Elgabarty, Hossam and Lass, Michael and Schütt, Ole and Lazzaro, Alfio and Pabst, Hans and Mohr, Stephan and Hutter, Jürg and Kühne, Thomas D. and et al.}, year={2021} }"},"language":[{"iso":"eng"}],"_id":"32244","date_updated":"2022-06-28T07:49:31Z","status":"public","project":[{"name":"PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing","_id":"52"}],"date_created":"2022-06-28T07:48:31Z","author":[{"last_name":"Schade","full_name":"Schade, Robert","first_name":"Robert"},{"first_name":"Tobias","full_name":"Kenter, Tobias","last_name":"Kenter"},{"last_name":"Elgabarty","full_name":"Elgabarty, Hossam","first_name":"Hossam"},{"last_name":"Lass","full_name":"Lass, Michael","first_name":"Michael"},{"last_name":"Schütt","full_name":"Schütt, Ole","first_name":"Ole"},{"last_name":"Lazzaro","full_name":"Lazzaro, Alfio","first_name":"Alfio"},{"last_name":"Pabst","first_name":"Hans","full_name":"Pabst, Hans"},{"full_name":"Mohr, Stephan","first_name":"Stephan","last_name":"Mohr"},{"full_name":"Hutter, Jürg","first_name":"Jürg","last_name":"Hutter"},{"last_name":"Kühne","first_name":"Thomas D.","full_name":"Kühne, Thomas D."},{"last_name":"Plessl","first_name":"Christian","full_name":"Plessl, Christian"}],"publication":"arXiv:2104.08245","department":[{"_id":"27"}],"title":"Towards Electronic Structure-Based Ab-Initio Molecular Dynamics Simulations with Hundreds of Millions of Atoms","user_id":"15278","abstract":[{"text":"We push the boundaries of electronic structure-based \\textit{ab-initio}\r\nmolecular dynamics (AIMD) beyond 100 million atoms. This scale is otherwise\r\nbarely reachable with classical force-field methods or novel neural network and\r\nmachine learning potentials. We achieve this breakthrough by combining\r\ninnovations in linear-scaling AIMD, efficient and approximate sparse linear\r\nalgebra, low and mixed-precision floating-point computation on GPUs, and a\r\ncompensation scheme for the errors introduced by numerical approximations. The\r\ncore of our work is the non-orthogonalized local submatrix method (NOLSM),\r\nwhich scales very favorably to massively parallel computing systems and\r\ntranslates large sparse matrix operations into highly parallel, dense matrix\r\noperations that are ideally suited to hardware accelerators. We demonstrate\r\nthat the NOLSM method, which is at the center point of each AIMD step, is able\r\nto achieve a sustained performance of 324 PFLOP/s in mixed FP16/FP32 precision\r\ncorresponding to an efficiency of 67.7% when running on 1536 NVIDIA A100 GPUs.","lang":"eng"}],"external_id":{"arxiv":["2104.08245"]}},{"publication":"arXiv:2106.02468","department":[{"_id":"27"}],"author":[{"last_name":"Farheen","first_name":"Henna","full_name":"Farheen, Henna"},{"last_name":"Leuteritz","first_name":"Till","full_name":"Leuteritz, Till"},{"last_name":"Linden","first_name":"Stefan","full_name":"Linden, Stefan"},{"last_name":"Myroshnychenko","full_name":"Myroshnychenko, Viktor","first_name":"Viktor"},{"first_name":"Jens","full_name":"Förstner, Jens","last_name":"Förstner"}],"project":[{"name":"PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing","_id":"52"}],"date_created":"2022-06-28T08:01:09Z","status":"public","external_id":{"arxiv":["2106.02468"]},"abstract":[{"lang":"eng","text":"Optical travelling wave antennas offer unique opportunities to control and\r\nselectively guide light into a specific direction which renders them as\r\nexcellent candidates for optical communication and sensing. These applications\r\nrequire state of the art engineering to reach optimized functionalities such as\r\nhigh directivity and radiation efficiency, low side lobe level, broadband and\r\ntunable capabilities, and compact design. In this work we report on the\r\nnumerical optimization of the directivity of optical travelling wave antennas\r\nmade from low-loss dielectric materials using full-wave numerical simulations\r\nin conjunction with a particle swarm optimization algorithm. The antennas are\r\ncomposed of a reflector and a director deposited on a glass substrate and an\r\nemitter placed in the feed gap between them serves as an internal source of\r\nexcitation. In particular, we analysed antennas with rectangular- and\r\nhorn-shaped directors made of either Hafnium dioxide or Silicon. The optimized\r\nantennas produce highly directional emission due to the presence of two\r\ndominant guided TE modes in the director in addition to leaky modes. These\r\nguided modes dominate the far-field emission pattern and govern the direction\r\nof the main lobe emission which predominately originates from the end facet of\r\nthe director. Our work also provides a comprehensive analysis of the modes,\r\nradiation patterns, parametric influences, and bandwidths of the antennas that\r\nhighlights their robust nature."}],"user_id":"15278","title":"Optimization of optical waveguide antennas for directive emission of light","language":[{"iso":"eng"}],"year":"2021","citation":{"bibtex":"@article{Farheen_Leuteritz_Linden_Myroshnychenko_Förstner_2021, title={Optimization of optical waveguide antennas for directive emission of light}, journal={arXiv:2106.02468}, author={Farheen, Henna and Leuteritz, Till and Linden, Stefan and Myroshnychenko, Viktor and Förstner, Jens}, year={2021} }","mla":"Farheen, Henna, et al. “Optimization of Optical Waveguide Antennas for Directive Emission of Light.” ArXiv:2106.02468, 2021.","chicago":"Farheen, Henna, Till Leuteritz, Stefan Linden, Viktor Myroshnychenko, and Jens Förstner. “Optimization of Optical Waveguide Antennas for Directive Emission of Light.” ArXiv:2106.02468, 2021.","apa":"Farheen, H., Leuteritz, T., Linden, S., Myroshnychenko, V., & Förstner, J. (2021). Optimization of optical waveguide antennas for directive emission of light. In arXiv:2106.02468.","ama":"Farheen H, Leuteritz T, Linden S, Myroshnychenko V, Förstner J. Optimization of optical waveguide antennas for directive emission of light. arXiv:210602468. Published online 2021.","ieee":"H. Farheen, T. Leuteritz, S. Linden, V. Myroshnychenko, and J. Förstner, “Optimization of optical waveguide antennas for directive emission of light,” arXiv:2106.02468. 2021.","short":"H. Farheen, T. Leuteritz, S. Linden, V. Myroshnychenko, J. Förstner, ArXiv:2106.02468 (2021)."},"type":"preprint","date_updated":"2022-06-28T08:01:39Z","_id":"32245"},{"abstract":[{"lang":"eng","text":"The interaction between quantum light and matter is being intensively studied\r\nfor systems that are enclosed in high-$Q$ cavities which strongly enhance the\r\nlight-matter coupling. However, for many applications, cavities with lower\r\n$Q$-factors are preferred due to the increased spectral width of the cavity\r\nmode. Here, we investigate the interaction between quantum light and matter\r\nrepresented by a $\\Lambda$-type three-level system in lossy cavities, assuming\r\nthat cavity losses are the dominant loss mechanism. We demonstrate that cavity\r\nlosses lead to non-trivial steady states of the electronic occupations that can\r\nbe controlled by the loss rate and the initial statistics of the quantum\r\nfields. The mechanism of formation of such steady states can be understood on\r\nthe basis of the equations of motion. Analytical expressions for steady states\r\nand their numerical simulations are presented and discussed."}],"external_id":{"arxiv":["2109.00842"]},"user_id":"14931","title":"Steady states of $Λ$-type three-level systems excited by quantum light in lossy cavities","author":[{"full_name":"Rose, H.","first_name":"H.","last_name":"Rose"},{"last_name":"Tikhonova","first_name":"O. V.","full_name":"Tikhonova, O. V."},{"last_name":"Meier","full_name":"Meier, T.","first_name":"T."},{"first_name":"P. ","full_name":"Sharapova, P. ","last_name":"Sharapova"}],"department":[{"_id":"27"}],"publication":"arXiv:2109.00842","status":"public","date_created":"2022-06-28T07:03:29Z","project":[{"name":"PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing","_id":"52"}],"_id":"32236","date_updated":"2023-02-10T16:00:12Z","language":[{"iso":"eng"}],"type":"preprint","citation":{"short":"H. Rose, O.V. Tikhonova, T. Meier, P. Sharapova, ArXiv:2109.00842 (2021).","ieee":"H. Rose, O. V. Tikhonova, T. Meier, and P. Sharapova, “Steady states of $Λ$-type three-level systems excited by quantum light in lossy cavities,” arXiv:2109.00842. 2021.","apa":"Rose, H., Tikhonova, O. V., Meier, T., & Sharapova, P. (2021). Steady states of $Λ$-type three-level systems excited by quantum light in lossy cavities. In arXiv:2109.00842.","ama":"Rose H, Tikhonova OV, Meier T, Sharapova P. Steady states of $Λ$-type three-level systems excited by quantum light in lossy cavities. arXiv:210900842. Published online 2021.","chicago":"Rose, H., O. V. Tikhonova, T. Meier, and P. Sharapova. “Steady States of $Λ$-Type Three-Level Systems Excited by Quantum Light in Lossy Cavities.” ArXiv:2109.00842, 2021.","bibtex":"@article{Rose_Tikhonova_Meier_Sharapova_2021, title={Steady states of $Λ$-type three-level systems excited by quantum light in lossy cavities}, journal={arXiv:2109.00842}, author={Rose, H. and Tikhonova, O. V. and Meier, T. and Sharapova, P. }, year={2021} }","mla":"Rose, H., et al. “Steady States of $Λ$-Type Three-Level Systems Excited by Quantum Light in Lossy Cavities.” ArXiv:2109.00842, 2021."},"year":"2021"},{"title":"Eigenvalue spectra of QCD and the fate of UA(1) breaking towards the chiral limit","department":[{"_id":"27"}],"publication_status":"published","publication_identifier":{"issn":["2470-0010","2470-0029"]},"date_updated":"2023-07-26T09:23:02Z","doi":"10.1103/physrevd.104.094518","language":[{"iso":"eng"}],"extern":"1","user_id":"90492","publication":"Physical Review D","quality_controlled":"1","author":[{"last_name":"Kaczmarek","full_name":"Kaczmarek, Olaf","first_name":"Olaf"},{"full_name":"Mazur, Lukas","orcid":" 0000-0001-6304-7082","first_name":"Lukas","id":"90492","last_name":"Mazur"},{"last_name":"Sharma","full_name":"Sharma, Sayantan","first_name":"Sayantan"}],"publisher":"American Physical Society (APS)","date_created":"2023-07-24T11:03:06Z","status":"public","volume":104,"intvolume":" 104","_id":"46122","issue":"9","article_number":"094518","type":"journal_article","year":"2021","citation":{"mla":"Kaczmarek, Olaf, et al. “Eigenvalue Spectra of QCD and the Fate of <mml:Math Xmlns:Mml=\"http://Www.W3.Org/1998/Math/MathML\" Display=\"inline\"><mml:Msub><mml:Mi>U</Mml:Mi><mml:Mi>A</Mml:Mi></Mml:Msub><mml:Mo Stretchy=\"false\">(</Mml:Mo><mml:Mn>1</Mml:Mn><mml:Mo Stretchy=\"false\">)</Mml:Mo></Mml:Math> Breaking towards the Chiral Limit.” Physical Review D, vol. 104, no. 9, 094518, American Physical Society (APS), 2021, doi:10.1103/physrevd.104.094518.","bibtex":"@article{Kaczmarek_Mazur_Sharma_2021, title={Eigenvalue spectra of QCD and the fate of <mml:math xmlns:mml=\"http://www.w3.org/1998/Math/MathML\" display=\"inline\"><mml:msub><mml:mi>U</mml:mi><mml:mi>A</mml:mi></mml:msub><mml:mo stretchy=\"false\">(</mml:mo><mml:mn>1</mml:mn><mml:mo stretchy=\"false\">)</mml:mo></mml:math> breaking towards the chiral limit}, volume={104}, DOI={10.1103/physrevd.104.094518}, number={9094518}, journal={Physical Review D}, publisher={American Physical Society (APS)}, author={Kaczmarek, Olaf and Mazur, Lukas and Sharma, Sayantan}, year={2021} }","chicago":"Kaczmarek, Olaf, Lukas Mazur, and Sayantan Sharma. “Eigenvalue Spectra of QCD and the Fate of <mml:Math Xmlns:Mml=\"http://Www.W3.Org/1998/Math/MathML\" Display=\"inline\"><mml:Msub><mml:Mi>U</Mml:Mi><mml:Mi>A</Mml:Mi></Mml:Msub><mml:Mo Stretchy=\"false\">(</Mml:Mo><mml:Mn>1</Mml:Mn><mml:Mo Stretchy=\"false\">)</Mml:Mo></Mml:Math> Breaking towards the Chiral Limit.” Physical Review D 104, no. 9 (2021). https://doi.org/10.1103/physrevd.104.094518.","ama":"Kaczmarek O, Mazur L, Sharma S. Eigenvalue spectra of QCD and the fate of <mml:math xmlns:mml=\"http://www.w3.org/1998/Math/MathML\" display=\"inline\"><mml:msub><mml:mi>U</mml:mi><mml:mi>A</mml:mi></mml:msub><mml:mo stretchy=\"false\">(</mml:mo><mml:mn>1</mml:mn><mml:mo stretchy=\"false\">)</mml:mo></mml:math> breaking towards the chiral limit. Physical Review D. 2021;104(9). doi:10.1103/physrevd.104.094518","apa":"Kaczmarek, O., Mazur, L., & Sharma, S. (2021). Eigenvalue spectra of QCD and the fate of <mml:math xmlns:mml=\"http://www.w3.org/1998/Math/MathML\" display=\"inline\"><mml:msub><mml:mi>U</mml:mi><mml:mi>A</mml:mi></mml:msub><mml:mo stretchy=\"false\">(</mml:mo><mml:mn>1</mml:mn><mml:mo stretchy=\"false\">)</mml:mo></mml:math> breaking towards the chiral limit. Physical Review D, 104(9), Article 094518. https://doi.org/10.1103/physrevd.104.094518","ieee":"O. Kaczmarek, L. Mazur, and S. Sharma, “Eigenvalue spectra of QCD and the fate of <mml:math xmlns:mml=\"http://www.w3.org/1998/Math/MathML\" display=\"inline\"><mml:msub><mml:mi>U</mml:mi><mml:mi>A</mml:mi></mml:msub><mml:mo stretchy=\"false\">(</mml:mo><mml:mn>1</mml:mn><mml:mo stretchy=\"false\">)</mml:mo></mml:math> breaking towards the chiral limit,” Physical Review D, vol. 104, no. 9, Art. no. 094518, 2021, doi: 10.1103/physrevd.104.094518.","short":"O. Kaczmarek, L. Mazur, S. Sharma, Physical Review D 104 (2021)."}},{"title":"Heavy quark momentum diffusion from the lattice using gradient flow","department":[{"_id":"27"}],"publication_identifier":{"issn":["2470-0010","2470-0029"]},"publication_status":"published","date_updated":"2023-07-26T09:22:09Z","doi":"10.1103/physrevd.103.014511","language":[{"iso":"eng"}],"extern":"1","user_id":"90492","author":[{"last_name":"Altenkort","first_name":"Luis","full_name":"Altenkort, Luis"},{"first_name":"Alexander M.","full_name":"Eller, Alexander M.","last_name":"Eller"},{"last_name":"Kaczmarek","first_name":"O.","full_name":"Kaczmarek, O."},{"last_name":"Mazur","id":"90492","first_name":"Lukas","full_name":"Mazur, Lukas","orcid":" 0000-0001-6304-7082"},{"full_name":"Moore, Guy D.","first_name":"Guy D.","last_name":"Moore"},{"first_name":"H.-T.","full_name":"Shu, H.-T.","last_name":"Shu"}],"publisher":"American Physical Society (APS)","quality_controlled":"1","publication":"Physical Review D","volume":103,"status":"public","date_created":"2023-07-24T11:05:25Z","intvolume":" 103","_id":"46124","article_number":"014511","issue":"1","year":"2021","citation":{"short":"L. Altenkort, A.M. Eller, O. Kaczmarek, L. Mazur, G.D. Moore, H.-T. Shu, Physical Review D 103 (2021).","ieee":"L. Altenkort, A. M. Eller, O. Kaczmarek, L. Mazur, G. D. Moore, and H.-T. Shu, “Heavy quark momentum diffusion from the lattice using gradient flow,” Physical Review D, vol. 103, no. 1, Art. no. 014511, 2021, doi: 10.1103/physrevd.103.014511.","ama":"Altenkort L, Eller AM, Kaczmarek O, Mazur L, Moore GD, Shu H-T. Heavy quark momentum diffusion from the lattice using gradient flow. Physical Review D. 2021;103(1). doi:10.1103/physrevd.103.014511","apa":"Altenkort, L., Eller, A. M., Kaczmarek, O., Mazur, L., Moore, G. D., & Shu, H.-T. (2021). Heavy quark momentum diffusion from the lattice using gradient flow. Physical Review D, 103(1), Article 014511. https://doi.org/10.1103/physrevd.103.014511","chicago":"Altenkort, Luis, Alexander M. Eller, O. Kaczmarek, Lukas Mazur, Guy D. Moore, and H.-T. Shu. “Heavy Quark Momentum Diffusion from the Lattice Using Gradient Flow.” Physical Review D 103, no. 1 (2021). https://doi.org/10.1103/physrevd.103.014511.","bibtex":"@article{Altenkort_Eller_Kaczmarek_Mazur_Moore_Shu_2021, title={Heavy quark momentum diffusion from the lattice using gradient flow}, volume={103}, DOI={10.1103/physrevd.103.014511}, number={1014511}, journal={Physical Review D}, publisher={American Physical Society (APS)}, author={Altenkort, Luis and Eller, Alexander M. and Kaczmarek, O. and Mazur, Lukas and Moore, Guy D. and Shu, H.-T.}, year={2021} }","mla":"Altenkort, Luis, et al. “Heavy Quark Momentum Diffusion from the Lattice Using Gradient Flow.” Physical Review D, vol. 103, no. 1, 014511, American Physical Society (APS), 2021, doi:10.1103/physrevd.103.014511."},"type":"journal_article"}]