--- _id: '46120' abstract: - lang: eng text: The rise of exascale supercomputers has fueled competition among GPU vendors, driving lattice QCD developers to write code that supports multiple APIs. Moreover, new developments in algorithms and physics research require frequent updates to existing software. These challenges have to be balanced against constantly changing personnel. At the same time, there is a wide range of applications for HISQ fermions in QCD studies. This situation encourages the development of software featuring a HISQ action that is flexible, high-performing, open source, easy to use, and easy to adapt. In this technical paper, we explain the design strategy, provide implementation details, list available algorithms and modules, and show key performance indicators for SIMULATeQCD, a simple multi-GPU lattice code for large-scale QCD calculations, mainly developed and used by the HotQCD collaboration. The code is publicly available on GitHub. author: - first_name: Lukas full_name: Mazur, Lukas id: '90492' last_name: Mazur orcid: ' 0000-0001-6304-7082' - first_name: Dennis full_name: Bollweg, Dennis last_name: Bollweg - first_name: David A. full_name: Clarke, David A. last_name: Clarke - first_name: Luis full_name: Altenkort, Luis last_name: Altenkort - first_name: Olaf full_name: Kaczmarek, Olaf last_name: Kaczmarek - first_name: Rasmus full_name: Larsen, Rasmus last_name: Larsen - first_name: Hai-Tao full_name: Shu, Hai-Tao last_name: Shu - first_name: Jishnu full_name: Goswami, Jishnu last_name: Goswami - first_name: Philipp full_name: Scior, Philipp last_name: Scior - first_name: Hauke full_name: Sandmeyer, Hauke last_name: Sandmeyer - first_name: Marius full_name: Neumann, Marius last_name: Neumann - first_name: Henrik full_name: Dick, Henrik last_name: Dick - first_name: Sajid full_name: Ali, Sajid last_name: Ali - first_name: Jangho full_name: Kim, Jangho last_name: Kim - first_name: Christian full_name: Schmidt, Christian last_name: Schmidt - first_name: Peter full_name: Petreczky, Peter last_name: Petreczky - first_name: Swagato full_name: Mukherjee, Swagato last_name: Mukherjee citation: ama: 'Mazur L, Bollweg D, Clarke DA, et al. SIMULATeQCD: A simple multi-GPU lattice code for QCD calculations. Computer Physics Communications. Published online 2023. doi:10.48550/ARXIV.2306.01098' apa: 'Mazur, L., Bollweg, D., Clarke, D. A., Altenkort, L., Kaczmarek, O., Larsen, R., Shu, H.-T., Goswami, J., Scior, P., Sandmeyer, H., Neumann, M., Dick, H., Ali, S., Kim, J., Schmidt, C., Petreczky, P., & Mukherjee, S. (2023). SIMULATeQCD: A simple multi-GPU lattice code for QCD calculations. Computer Physics Communications. https://doi.org/10.48550/ARXIV.2306.01098' bibtex: '@article{Mazur_Bollweg_Clarke_Altenkort_Kaczmarek_Larsen_Shu_Goswami_Scior_Sandmeyer_et al._2023, title={SIMULATeQCD: A simple multi-GPU lattice code for QCD calculations}, DOI={10.48550/ARXIV.2306.01098}, journal={Computer Physics Communications}, author={Mazur, Lukas and Bollweg, Dennis and Clarke, David A. and Altenkort, Luis and Kaczmarek, Olaf and Larsen, Rasmus and Shu, Hai-Tao and Goswami, Jishnu and Scior, Philipp and Sandmeyer, Hauke and et al.}, year={2023} }' chicago: 'Mazur, Lukas, Dennis Bollweg, David A. Clarke, Luis Altenkort, Olaf Kaczmarek, Rasmus Larsen, Hai-Tao Shu, et al. “SIMULATeQCD: A Simple Multi-GPU Lattice Code for QCD Calculations.” Computer Physics Communications, 2023. https://doi.org/10.48550/ARXIV.2306.01098.' ieee: 'L. Mazur et al., “SIMULATeQCD: A simple multi-GPU lattice code for QCD calculations,” Computer Physics Communications, 2023, doi: 10.48550/ARXIV.2306.01098.' mla: 'Mazur, Lukas, et al. “SIMULATeQCD: A Simple Multi-GPU Lattice Code for QCD Calculations.” Computer Physics Communications, 2023, doi:10.48550/ARXIV.2306.01098.' short: L. Mazur, D. Bollweg, D.A. Clarke, L. Altenkort, O. Kaczmarek, R. Larsen, H.-T. Shu, J. Goswami, P. Scior, H. Sandmeyer, M. Neumann, H. Dick, S. Ali, J. Kim, C. Schmidt, P. Petreczky, S. Mukherjee, Computer Physics Communications (2023). date_created: 2023-07-24T10:55:25Z date_updated: 2023-07-26T09:21:35Z department: - _id: '27' doi: 10.48550/ARXIV.2306.01098 language: - iso: eng publication: Computer Physics Communications status: public title: 'SIMULATeQCD: A simple multi-GPU lattice code for QCD calculations' type: journal_article user_id: '90492' year: '2023' ... --- _id: '46119' article_number: '014503' author: - first_name: Luis full_name: Altenkort, Luis last_name: Altenkort - first_name: Alexander M. full_name: Eller, Alexander M. last_name: Eller - first_name: Anthony full_name: Francis, Anthony last_name: Francis - first_name: Olaf full_name: Kaczmarek, Olaf last_name: Kaczmarek - first_name: Lukas full_name: Mazur, Lukas id: '90492' last_name: Mazur orcid: ' 0000-0001-6304-7082' - first_name: Guy D. full_name: Moore, Guy D. last_name: Moore - first_name: Hai-Tao full_name: Shu, Hai-Tao last_name: Shu citation: ama: Altenkort L, Eller AM, Francis A, et al. Viscosity of pure-glue QCD from the lattice. Physical Review D. 2023;108(1). doi:10.1103/physrevd.108.014503 apa: Altenkort, L., Eller, A. M., Francis, A., Kaczmarek, O., Mazur, L., Moore, G. D., & Shu, H.-T. (2023). Viscosity of pure-glue QCD from the lattice. Physical Review D, 108(1), Article 014503. https://doi.org/10.1103/physrevd.108.014503 bibtex: '@article{Altenkort_Eller_Francis_Kaczmarek_Mazur_Moore_Shu_2023, title={Viscosity of pure-glue QCD from the lattice}, volume={108}, DOI={10.1103/physrevd.108.014503}, number={1014503}, journal={Physical Review D}, publisher={American Physical Society (APS)}, author={Altenkort, Luis and Eller, Alexander M. and Francis, Anthony and Kaczmarek, Olaf and Mazur, Lukas and Moore, Guy D. and Shu, Hai-Tao}, year={2023} }' chicago: Altenkort, Luis, Alexander M. Eller, Anthony Francis, Olaf Kaczmarek, Lukas Mazur, Guy D. Moore, and Hai-Tao Shu. “Viscosity of Pure-Glue QCD from the Lattice.” Physical Review D 108, no. 1 (2023). https://doi.org/10.1103/physrevd.108.014503. ieee: 'L. Altenkort et al., “Viscosity of pure-glue QCD from the lattice,” Physical Review D, vol. 108, no. 1, Art. no. 014503, 2023, doi: 10.1103/physrevd.108.014503.' mla: Altenkort, Luis, et al. “Viscosity of Pure-Glue QCD from the Lattice.” Physical Review D, vol. 108, no. 1, 014503, American Physical Society (APS), 2023, doi:10.1103/physrevd.108.014503. short: L. Altenkort, A.M. Eller, A. Francis, O. Kaczmarek, L. Mazur, G.D. Moore, H.-T. Shu, Physical Review D 108 (2023). date_created: 2023-07-24T10:54:18Z date_updated: 2023-07-26T09:23:32Z department: - _id: '27' doi: 10.1103/physrevd.108.014503 intvolume: ' 108' issue: '1' language: - iso: eng publication: Physical Review D publication_identifier: issn: - 2470-0010 - 2470-0029 publication_status: published publisher: American Physical Society (APS) quality_controlled: '1' status: public title: Viscosity of pure-glue QCD from the lattice type: journal_article user_id: '90492' volume: 108 year: '2023' ... --- _id: '38041' abstract: - lang: eng text: "While FPGA accelerator boards and their respective high-level design tools are maturing, there is still a lack of multi-FPGA applications, libraries, and not least, benchmarks and reference implementations towards sustained HPC usage of these devices. As in the early days of GPUs in HPC, for workloads that can reasonably be decoupled into loosely coupled working sets, multi-accelerator support can be achieved by using standard communication interfaces like MPI on the host side. However, for performance and productivity, some applications can profit from a tighter coupling of the accelerators. FPGAs offer unique opportunities here when extending the dataflow characteristics to their communication interfaces.\r\n \ In this work, we extend the HPCC FPGA benchmark suite by multi-FPGA support and three missing benchmarks that particularly characterize or stress inter-device communication: b_eff, PTRANS, and LINPACK. With all benchmarks implemented for current boards with Intel and Xilinx FPGAs, we established a baseline for multi-FPGA performance. Additionally, for the communication-centric benchmarks, we explored the potential of direct FPGA-to-FPGA communication with a circuit-switched inter-FPGA network that is currently only available for one of the boards. The evaluation with parallel execution on up to 26 FPGA boards makes use of one of the largest academic FPGA installations." author: - first_name: Marius full_name: Meyer, Marius id: '40778' last_name: Meyer - first_name: Tobias full_name: Kenter, Tobias id: '3145' last_name: Kenter - first_name: Christian full_name: Plessl, Christian id: '16153' last_name: Plessl orcid: 0000-0001-5728-9982 citation: ama: Meyer M, Kenter T, Plessl C. Multi-FPGA Designs and Scaling of HPC Challenge Benchmarks via MPI and Circuit-Switched Inter-FPGA Networks. ACM Transactions on Reconfigurable Technology and Systems. Published online 2023. doi:10.1145/3576200 apa: Meyer, M., Kenter, T., & Plessl, C. (2023). Multi-FPGA Designs and Scaling of HPC Challenge Benchmarks via MPI and Circuit-Switched Inter-FPGA Networks. ACM Transactions on Reconfigurable Technology and Systems. https://doi.org/10.1145/3576200 bibtex: '@article{Meyer_Kenter_Plessl_2023, title={Multi-FPGA Designs and Scaling of HPC Challenge Benchmarks via MPI and Circuit-Switched Inter-FPGA Networks}, DOI={10.1145/3576200}, journal={ACM Transactions on Reconfigurable Technology and Systems}, publisher={Association for Computing Machinery (ACM)}, author={Meyer, Marius and Kenter, Tobias and Plessl, Christian}, year={2023} }' chicago: Meyer, Marius, Tobias Kenter, and Christian Plessl. “Multi-FPGA Designs and Scaling of HPC Challenge Benchmarks via MPI and Circuit-Switched Inter-FPGA Networks.” ACM Transactions on Reconfigurable Technology and Systems, 2023. https://doi.org/10.1145/3576200. ieee: 'M. Meyer, T. Kenter, and C. Plessl, “Multi-FPGA Designs and Scaling of HPC Challenge Benchmarks via MPI and Circuit-Switched Inter-FPGA Networks,” ACM Transactions on Reconfigurable Technology and Systems, 2023, doi: 10.1145/3576200.' mla: Meyer, Marius, et al. “Multi-FPGA Designs and Scaling of HPC Challenge Benchmarks via MPI and Circuit-Switched Inter-FPGA Networks.” ACM Transactions on Reconfigurable Technology and Systems, Association for Computing Machinery (ACM), 2023, doi:10.1145/3576200. short: M. Meyer, T. Kenter, C. Plessl, ACM Transactions on Reconfigurable Technology and Systems (2023). date_created: 2023-01-23T08:40:42Z date_updated: 2023-07-28T08:02:05Z department: - _id: '27' - _id: '518' doi: 10.1145/3576200 keyword: - General Computer Science language: - iso: eng main_file_link: - open_access: '1' url: https://dl.acm.org/doi/10.1145/3576200 oa: '1' project: - _id: '52' name: 'PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing' - _id: '4' name: 'SFB 901 - C: SFB 901 - Project Area C' - _id: '1' grant_number: '160364472' name: 'SFB 901: SFB 901' - _id: '14' grant_number: '160364472' name: 'SFB 901 - C2: SFB 901 - Subproject C2' publication: ACM Transactions on Reconfigurable Technology and Systems publication_identifier: issn: - 1936-7406 - 1936-7414 publication_status: published publisher: Association for Computing Machinery (ACM) quality_controlled: '1' status: public title: Multi-FPGA Designs and Scaling of HPC Challenge Benchmarks via MPI and Circuit-Switched Inter-FPGA Networks type: journal_article user_id: '24135' year: '2023' ... --- _id: '45361' abstract: - lang: eng text: The non-orthogonal local submatrix method applied to electronic structure–based molecular dynamics simulations is shown to exceed 1.1 EFLOP/s in FP16/FP32-mixed floating-point arithmetic when using 4400 NVIDIA A100 GPUs of the Perlmutter system. This is enabled by a modification of the original method that pushes the sustained fraction of the peak performance to about 80%. Example calculations are performed for SARS-CoV-2 spike proteins with up to 83 million atoms. article_number: '109434202311776' article_type: original author: - first_name: Robert full_name: Schade, Robert id: '75963' last_name: Schade orcid: 0000-0002-6268-539 - first_name: Tobias full_name: Kenter, Tobias id: '3145' last_name: Kenter - first_name: Hossam full_name: Elgabarty, Hossam id: '60250' last_name: Elgabarty orcid: 0000-0002-4945-1481 - first_name: Michael full_name: Lass, Michael id: '24135' last_name: Lass orcid: 0000-0002-5708-7632 - first_name: Thomas full_name: Kühne, Thomas id: '49079' last_name: Kühne - first_name: Christian full_name: Plessl, Christian id: '16153' last_name: Plessl orcid: 0000-0001-5728-9982 citation: ama: Schade R, Kenter T, Elgabarty H, Lass M, Kühne T, Plessl C. Breaking the exascale barrier for the electronic structure problem in ab-initio molecular dynamics. The International Journal of High Performance Computing Applications. Published online 2023. doi:10.1177/10943420231177631 apa: Schade, R., Kenter, T., Elgabarty, H., Lass, M., Kühne, T., & Plessl, C. (2023). Breaking the exascale barrier for the electronic structure problem in ab-initio molecular dynamics. The International Journal of High Performance Computing Applications, Article 109434202311776. https://doi.org/10.1177/10943420231177631 bibtex: '@article{Schade_Kenter_Elgabarty_Lass_Kühne_Plessl_2023, title={Breaking the exascale barrier for the electronic structure problem in ab-initio molecular dynamics}, DOI={10.1177/10943420231177631}, number={109434202311776}, journal={The International Journal of High Performance Computing Applications}, publisher={SAGE Publications}, author={Schade, Robert and Kenter, Tobias and Elgabarty, Hossam and Lass, Michael and Kühne, Thomas and Plessl, Christian}, year={2023} }' chicago: Schade, Robert, Tobias Kenter, Hossam Elgabarty, Michael Lass, Thomas Kühne, and Christian Plessl. “Breaking the Exascale Barrier for the Electronic Structure Problem in Ab-Initio Molecular Dynamics.” The International Journal of High Performance Computing Applications, 2023. https://doi.org/10.1177/10943420231177631. ieee: 'R. Schade, T. Kenter, H. Elgabarty, M. Lass, T. Kühne, and C. Plessl, “Breaking the exascale barrier for the electronic structure problem in ab-initio molecular dynamics,” The International Journal of High Performance Computing Applications, Art. no. 109434202311776, 2023, doi: 10.1177/10943420231177631.' mla: Schade, Robert, et al. “Breaking the Exascale Barrier for the Electronic Structure Problem in Ab-Initio Molecular Dynamics.” The International Journal of High Performance Computing Applications, 109434202311776, SAGE Publications, 2023, doi:10.1177/10943420231177631. short: R. Schade, T. Kenter, H. Elgabarty, M. Lass, T. Kühne, C. Plessl, The International Journal of High Performance Computing Applications (2023). date_created: 2023-05-30T09:19:09Z date_updated: 2023-08-02T15:04:53Z department: - _id: '27' - _id: '518' doi: 10.1177/10943420231177631 keyword: - Hardware and Architecture - Theoretical Computer Science - Software language: - iso: eng main_file_link: - open_access: '1' url: https://journals.sagepub.com/doi/10.1177/10943420231177631 oa: '1' project: - _id: '52' name: 'PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing' publication: The International Journal of High Performance Computing Applications publication_identifier: issn: - 1094-3420 - 1741-2846 publication_status: published publisher: SAGE Publications quality_controlled: '1' status: public title: Breaking the exascale barrier for the electronic structure problem in ab-initio molecular dynamics type: journal_article user_id: '75963' year: '2023' ... --- _id: '32183' author: - first_name: W full_name: Hou, W last_name: Hou - first_name: Y full_name: Yao, Y last_name: Yao - first_name: Y full_name: Li, Y last_name: Li - first_name: B full_name: Peng, B last_name: Peng - first_name: K full_name: Shi, K last_name: Shi - first_name: Z full_name: Zhou, Z last_name: Zhou - first_name: J full_name: Pan, J last_name: Pan - first_name: M full_name: Liu, M last_name: Liu - first_name: J full_name: Hu, J last_name: Hu citation: ama: Hou W, Yao Y, Li Y, et al. Linearly shifting ferromagnetic resonance response of La0.7Sr0.3MnO3 thin film for body temperature sensors. Frontiers of materials science. 2022;16(1). apa: Hou, W., Yao, Y., Li, Y., Peng, B., Shi, K., Zhou, Z., Pan, J., Liu, M., & Hu, J. (2022). Linearly shifting ferromagnetic resonance response of La0.7Sr0.3MnO3 thin film for body temperature sensors. Frontiers of Materials Science, 16(1). bibtex: '@article{Hou_Yao_Li_Peng_Shi_Zhou_Pan_Liu_Hu_2022, title={Linearly shifting ferromagnetic resonance response of La0.7Sr0.3MnO3 thin film for body temperature sensors}, volume={16}, number={1}, journal={Frontiers of materials science}, author={Hou, W and Yao, Y and Li, Y and Peng, B and Shi, K and Zhou, Z and Pan, J and Liu, M and Hu, J}, year={2022} }' chicago: Hou, W, Y Yao, Y Li, B Peng, K Shi, Z Zhou, J Pan, M Liu, and J Hu. “Linearly Shifting Ferromagnetic Resonance Response of La0.7Sr0.3MnO3 Thin Film for Body Temperature Sensors.” Frontiers of Materials Science 16, no. 1 (2022). ieee: W. Hou et al., “Linearly shifting ferromagnetic resonance response of La0.7Sr0.3MnO3 thin film for body temperature sensors,” Frontiers of materials science, vol. 16, no. 1, 2022. mla: Hou, W., et al. “Linearly Shifting Ferromagnetic Resonance Response of La0.7Sr0.3MnO3 Thin Film for Body Temperature Sensors.” Frontiers of Materials Science, vol. 16, no. 1, 2022. short: W. Hou, Y. Yao, Y. Li, B. Peng, K. Shi, Z. Zhou, J. Pan, M. Liu, J. Hu, Frontiers of Materials Science 16 (2022). date_created: 2022-06-27T09:43:47Z date_updated: 2022-06-27T12:49:59Z department: - _id: '27' intvolume: ' 16' issue: '1' language: - iso: eng project: - _id: '52' name: 'PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing' publication: Frontiers of materials science publication_identifier: issn: - 2095-025x status: public title: Linearly shifting ferromagnetic resonance response of La0.7Sr0.3MnO3 thin film for body temperature sensors type: journal_article user_id: '15278' volume: 16 year: '2022' ... --- _id: '32234' author: - first_name: M full_name: Wojciechowski, M last_name: Wojciechowski citation: ama: Wojciechowski M. Dataset for random uniform distributions of 2D circles and 3D spheres. Data Brief. 2022;43:108318. apa: Wojciechowski, M. (2022). Dataset for random uniform distributions of 2D circles and 3D spheres. Data Brief, 43, 108318. bibtex: '@article{Wojciechowski_2022, title={Dataset for random uniform distributions of 2D circles and 3D spheres.}, volume={43}, journal={Data Brief}, author={Wojciechowski, M}, year={2022}, pages={108318} }' chicago: 'Wojciechowski, M. “Dataset for Random Uniform Distributions of 2D Circles and 3D Spheres.” Data Brief 43 (2022): 108318.' ieee: M. Wojciechowski, “Dataset for random uniform distributions of 2D circles and 3D spheres.,” Data Brief, vol. 43, p. 108318, 2022. mla: Wojciechowski, M. “Dataset for Random Uniform Distributions of 2D Circles and 3D Spheres.” Data Brief, vol. 43, 2022, p. 108318. short: M. Wojciechowski, Data Brief 43 (2022) 108318. date_created: 2022-06-28T06:53:33Z date_updated: 2022-06-28T06:54:00Z department: - _id: '27' external_id: pmid: - '35677623' intvolume: ' 43' language: - iso: eng page: '108318' pmid: '1' project: - _id: '52' name: 'PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing' publication: Data Brief publication_identifier: issn: - 2352-3409 status: public title: Dataset for random uniform distributions of 2D circles and 3D spheres. type: journal_article user_id: '15278' volume: 43 year: '2022' ... --- _id: '40523' abstract: - lang: eng text: AbstractTailored nanoscale quantum light sources, matching the specific needs of use cases, are crucial building blocks for photonic quantum technologies. Several different approaches to realize solid-state quantum emitters with high performance have been pursued and different concepts for energy tuning have been established. However, the properties of the emitted photons are always defined by the individual quantum emitter and can therefore not be controlled with full flexibility. Here we introduce an all-optical nonlinear method to tailor and control the single photon emission. We demonstrate a laser-controlled down-conversion process from an excited state of a semiconductor quantum three-level system. Based on this concept, we realize energy tuning and polarization control of the single photon emission with a control-laser field. Our results mark an important step towards tailored single photon emission from a photonic quantum system based on quantum optical principles. article_number: '1387' author: - first_name: B. full_name: Jonas, B. last_name: Jonas - first_name: Dirk Florian full_name: Heinze, Dirk Florian id: '10904' last_name: Heinze - first_name: E. full_name: Schöll, E. last_name: Schöll - first_name: P. full_name: Kallert, P. last_name: Kallert - first_name: T. full_name: Langer, T. last_name: Langer - first_name: S. full_name: Krehs, S. last_name: Krehs - first_name: A. full_name: Widhalm, A. last_name: Widhalm - first_name: Klaus full_name: Jöns, Klaus id: '85353' last_name: Jöns - first_name: Dirk full_name: Reuter, Dirk id: '37763' last_name: Reuter - first_name: Stefan full_name: Schumacher, Stefan id: '27271' last_name: Schumacher orcid: 0000-0003-4042-4951 - first_name: Artur full_name: Zrenner, Artur id: '606' last_name: Zrenner orcid: 0000-0002-5190-0944 citation: ama: Jonas B, Heinze DF, Schöll E, et al. Nonlinear down-conversion in a single quantum dot. Nature Communications. 2022;13(1). doi:10.1038/s41467-022-28993-3 apa: Jonas, B., Heinze, D. F., Schöll, E., Kallert, P., Langer, T., Krehs, S., Widhalm, A., Jöns, K., Reuter, D., Schumacher, S., & Zrenner, A. (2022). Nonlinear down-conversion in a single quantum dot. Nature Communications, 13(1), Article 1387. https://doi.org/10.1038/s41467-022-28993-3 bibtex: '@article{Jonas_Heinze_Schöll_Kallert_Langer_Krehs_Widhalm_Jöns_Reuter_Schumacher_et al._2022, title={Nonlinear down-conversion in a single quantum dot}, volume={13}, DOI={10.1038/s41467-022-28993-3}, number={11387}, journal={Nature Communications}, publisher={Springer Science and Business Media LLC}, author={Jonas, B. and Heinze, Dirk Florian and Schöll, E. and Kallert, P. and Langer, T. and Krehs, S. and Widhalm, A. and Jöns, Klaus and Reuter, Dirk and Schumacher, Stefan and et al.}, year={2022} }' chicago: Jonas, B., Dirk Florian Heinze, E. Schöll, P. Kallert, T. Langer, S. Krehs, A. Widhalm, et al. “Nonlinear Down-Conversion in a Single Quantum Dot.” Nature Communications 13, no. 1 (2022). https://doi.org/10.1038/s41467-022-28993-3. ieee: 'B. Jonas et al., “Nonlinear down-conversion in a single quantum dot,” Nature Communications, vol. 13, no. 1, Art. no. 1387, 2022, doi: 10.1038/s41467-022-28993-3.' mla: Jonas, B., et al. “Nonlinear Down-Conversion in a Single Quantum Dot.” Nature Communications, vol. 13, no. 1, 1387, Springer Science and Business Media LLC, 2022, doi:10.1038/s41467-022-28993-3. short: B. Jonas, D.F. Heinze, E. Schöll, P. Kallert, T. Langer, S. Krehs, A. Widhalm, K. Jöns, D. Reuter, S. Schumacher, A. Zrenner, Nature Communications 13 (2022). date_created: 2023-01-27T13:41:42Z date_updated: 2023-04-20T15:18:31Z department: - _id: '15' - _id: '297' - _id: '230' - _id: '429' - _id: '27' - _id: '623' - _id: '170' - _id: '35' doi: 10.1038/s41467-022-28993-3 intvolume: ' 13' issue: '1' keyword: - General Physics and Astronomy - General Biochemistry - Genetics and Molecular Biology - General Chemistry - Multidisciplinary language: - iso: eng project: - _id: '53' name: 'TRR 142: TRR 142' - _id: '54' name: 'TRR 142 - A: TRR 142 - Project Area A' - _id: '60' name: 'TRR 142 - A03: TRR 142 - Subproject A03' - _id: '52' name: 'PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing' publication: Nature Communications publication_identifier: issn: - 2041-1723 publication_status: published publisher: Springer Science and Business Media LLC status: public title: Nonlinear down-conversion in a single quantum dot type: journal_article user_id: '16199' volume: 13 year: '2022' ... --- _id: '46121' article_number: '094505' author: - first_name: Luis full_name: Altenkort, Luis last_name: Altenkort - first_name: Alexander M. full_name: Eller, Alexander M. last_name: Eller - first_name: O. full_name: Kaczmarek, O. last_name: Kaczmarek - first_name: Lukas full_name: Mazur, Lukas id: '90492' last_name: Mazur orcid: ' 0000-0001-6304-7082' - first_name: Guy D. full_name: Moore, Guy D. last_name: Moore - first_name: Hai-Tao full_name: Shu, Hai-Tao last_name: Shu citation: ama: Altenkort L, Eller AM, Kaczmarek O, Mazur L, Moore GD, Shu H-T. Lattice QCD noise reduction for bosonic correlators through blocking. Physical Review D. 2022;105(9). doi:10.1103/physrevd.105.094505 apa: Altenkort, L., Eller, A. M., Kaczmarek, O., Mazur, L., Moore, G. D., & Shu, H.-T. (2022). Lattice QCD noise reduction for bosonic correlators through blocking. Physical Review D, 105(9), Article 094505. https://doi.org/10.1103/physrevd.105.094505 bibtex: '@article{Altenkort_Eller_Kaczmarek_Mazur_Moore_Shu_2022, title={Lattice QCD noise reduction for bosonic correlators through blocking}, volume={105}, DOI={10.1103/physrevd.105.094505}, number={9094505}, journal={Physical Review D}, publisher={American Physical Society (APS)}, author={Altenkort, Luis and Eller, Alexander M. and Kaczmarek, O. and Mazur, Lukas and Moore, Guy D. and Shu, Hai-Tao}, year={2022} }' chicago: Altenkort, Luis, Alexander M. Eller, O. Kaczmarek, Lukas Mazur, Guy D. Moore, and Hai-Tao Shu. “Lattice QCD Noise Reduction for Bosonic Correlators through Blocking.” Physical Review D 105, no. 9 (2022). https://doi.org/10.1103/physrevd.105.094505. ieee: 'L. Altenkort, A. M. Eller, O. Kaczmarek, L. Mazur, G. D. Moore, and H.-T. Shu, “Lattice QCD noise reduction for bosonic correlators through blocking,” Physical Review D, vol. 105, no. 9, Art. no. 094505, 2022, doi: 10.1103/physrevd.105.094505.' mla: Altenkort, Luis, et al. “Lattice QCD Noise Reduction for Bosonic Correlators through Blocking.” Physical Review D, vol. 105, no. 9, 094505, American Physical Society (APS), 2022, doi:10.1103/physrevd.105.094505. short: L. Altenkort, A.M. Eller, O. Kaczmarek, L. Mazur, G.D. Moore, H.-T. Shu, Physical Review D 105 (2022). date_created: 2023-07-24T10:58:37Z date_updated: 2023-07-26T09:23:17Z department: - _id: '27' doi: 10.1103/physrevd.105.094505 intvolume: ' 105' issue: '9' language: - iso: eng publication: Physical Review D publication_identifier: issn: - 2470-0010 - 2470-0029 publication_status: published publisher: American Physical Society (APS) quality_controlled: '1' status: public title: Lattice QCD noise reduction for bosonic correlators through blocking type: journal_article user_id: '90492' volume: 105 year: '2022' ... --- _id: '33226' abstract: - lang: eng text: A parallel hybrid quantum-classical algorithm for the solution of the quantum-chemical ground-state energy problem on gate-based quantum computers is presented. This approach is based on the reduced density-matrix functional theory (RDMFT) formulation of the electronic structure problem. For that purpose, the density-matrix functional of the full system is decomposed into an indirectly coupled sum of density-matrix functionals for all its subsystems using the adaptive cluster approximation to RDMFT. The approximations involved in the decomposition and the adaptive cluster approximation itself can be systematically converged to the exact result. The solutions for the density-matrix functionals of the effective subsystems involves a constrained minimization over many-particle states that are approximated by parametrized trial states on the quantum computer similarly to the variational quantum eigensolver. The independence of the density-matrix functionals of the effective subsystems introduces a new level of parallelization and allows for the computational treatment of much larger molecules on a quantum computer with a given qubit count. In addition, for the proposed algorithm techniques are presented to reduce the qubit count, the number of quantum programs, as well as its depth. The evaluation of a density-matrix functional as the essential part of our approach is demonstrated for Hubbard-like systems on IBM quantum computers based on superconducting transmon qubits. article_type: original author: - first_name: Robert full_name: Schade, Robert id: '75963' last_name: Schade orcid: 0000-0002-6268-539 - first_name: Carsten full_name: Bauer, Carsten id: '90082' last_name: Bauer - first_name: Konstantin full_name: Tamoev, Konstantin id: '50177' last_name: Tamoev - first_name: Lukas full_name: Mazur, Lukas id: '90492' last_name: Mazur orcid: ' 0000-0001-6304-7082' - first_name: Christian full_name: Plessl, Christian id: '16153' last_name: Plessl orcid: 0000-0001-5728-9982 - first_name: Thomas full_name: Kühne, Thomas id: '49079' last_name: Kühne citation: ama: Schade R, Bauer C, Tamoev K, Mazur L, Plessl C, Kühne T. Parallel quantum chemistry on noisy intermediate-scale quantum computers. Phys Rev Research. 2022;4:033160. doi:10.1103/PhysRevResearch.4.033160 apa: Schade, R., Bauer, C., Tamoev, K., Mazur, L., Plessl, C., & Kühne, T. (2022). Parallel quantum chemistry on noisy intermediate-scale quantum computers. Phys. Rev. Research, 4, 033160. https://doi.org/10.1103/PhysRevResearch.4.033160 bibtex: '@article{Schade_Bauer_Tamoev_Mazur_Plessl_Kühne_2022, title={Parallel quantum chemistry on noisy intermediate-scale quantum computers}, volume={4}, DOI={10.1103/PhysRevResearch.4.033160}, journal={Phys. Rev. Research}, publisher={American Physical Society}, author={Schade, Robert and Bauer, Carsten and Tamoev, Konstantin and Mazur, Lukas and Plessl, Christian and Kühne, Thomas}, year={2022}, pages={033160} }' chicago: 'Schade, Robert, Carsten Bauer, Konstantin Tamoev, Lukas Mazur, Christian Plessl, and Thomas Kühne. “Parallel Quantum Chemistry on Noisy Intermediate-Scale Quantum Computers.” Phys. Rev. Research 4 (2022): 033160. https://doi.org/10.1103/PhysRevResearch.4.033160.' ieee: 'R. Schade, C. Bauer, K. Tamoev, L. Mazur, C. Plessl, and T. Kühne, “Parallel quantum chemistry on noisy intermediate-scale quantum computers,” Phys. Rev. Research, vol. 4, p. 033160, 2022, doi: 10.1103/PhysRevResearch.4.033160.' mla: Schade, Robert, et al. “Parallel Quantum Chemistry on Noisy Intermediate-Scale Quantum Computers.” Phys. Rev. Research, vol. 4, American Physical Society, 2022, p. 033160, doi:10.1103/PhysRevResearch.4.033160. short: R. Schade, C. Bauer, K. Tamoev, L. Mazur, C. Plessl, T. Kühne, Phys. Rev. Research 4 (2022) 033160. date_created: 2022-08-29T14:07:01Z date_updated: 2023-08-02T15:04:22Z department: - _id: '27' - _id: '518' doi: 10.1103/PhysRevResearch.4.033160 intvolume: ' 4' language: - iso: eng main_file_link: - open_access: '1' url: https://journals.aps.org/prresearch/abstract/10.1103/PhysRevResearch.4.033160 oa: '1' page: '033160' project: - _id: '52' name: 'PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing' publication: Phys. Rev. Research publication_status: published publisher: American Physical Society quality_controlled: '1' status: public title: Parallel quantum chemistry on noisy intermediate-scale quantum computers type: journal_article user_id: '75963' volume: 4 year: '2022' ... --- _id: '33684' article_number: '102920' author: - first_name: Robert full_name: Schade, Robert id: '75963' last_name: Schade orcid: 0000-0002-6268-539 - first_name: Tobias full_name: Kenter, Tobias id: '3145' last_name: Kenter - first_name: Hossam full_name: Elgabarty, Hossam id: '60250' last_name: Elgabarty orcid: 0000-0002-4945-1481 - first_name: Michael full_name: Lass, Michael id: '24135' last_name: Lass orcid: 0000-0002-5708-7632 - first_name: Ole full_name: Schütt, Ole last_name: Schütt - first_name: Alfio full_name: Lazzaro, Alfio last_name: Lazzaro - first_name: Hans full_name: Pabst, Hans last_name: Pabst - first_name: Stephan full_name: Mohr, Stephan last_name: Mohr - first_name: Jürg full_name: Hutter, Jürg last_name: Hutter - first_name: Thomas full_name: Kühne, Thomas id: '49079' last_name: Kühne - first_name: Christian full_name: Plessl, Christian id: '16153' last_name: Plessl orcid: 0000-0001-5728-9982 citation: ama: Schade R, Kenter T, Elgabarty H, et al. Towards electronic structure-based ab-initio molecular dynamics simulations with hundreds of millions of atoms. Parallel Computing. 2022;111. doi:10.1016/j.parco.2022.102920 apa: Schade, R., Kenter, T., Elgabarty, H., Lass, M., Schütt, O., Lazzaro, A., Pabst, H., Mohr, S., Hutter, J., Kühne, T., & Plessl, C. (2022). Towards electronic structure-based ab-initio molecular dynamics simulations with hundreds of millions of atoms. Parallel Computing, 111, Article 102920. https://doi.org/10.1016/j.parco.2022.102920 bibtex: '@article{Schade_Kenter_Elgabarty_Lass_Schütt_Lazzaro_Pabst_Mohr_Hutter_Kühne_et al._2022, title={Towards electronic structure-based ab-initio molecular dynamics simulations with hundreds of millions of atoms}, volume={111}, DOI={10.1016/j.parco.2022.102920}, number={102920}, journal={Parallel Computing}, publisher={Elsevier BV}, author={Schade, Robert and Kenter, Tobias and Elgabarty, Hossam and Lass, Michael and Schütt, Ole and Lazzaro, Alfio and Pabst, Hans and Mohr, Stephan and Hutter, Jürg and Kühne, Thomas and et al.}, year={2022} }' chicago: Schade, Robert, Tobias Kenter, Hossam Elgabarty, Michael Lass, Ole Schütt, Alfio Lazzaro, Hans Pabst, et al. “Towards Electronic Structure-Based Ab-Initio Molecular Dynamics Simulations with Hundreds of Millions of Atoms.” Parallel Computing 111 (2022). https://doi.org/10.1016/j.parco.2022.102920. ieee: 'R. Schade et al., “Towards electronic structure-based ab-initio molecular dynamics simulations with hundreds of millions of atoms,” Parallel Computing, vol. 111, Art. no. 102920, 2022, doi: 10.1016/j.parco.2022.102920.' mla: Schade, Robert, et al. “Towards Electronic Structure-Based Ab-Initio Molecular Dynamics Simulations with Hundreds of Millions of Atoms.” Parallel Computing, vol. 111, 102920, Elsevier BV, 2022, doi:10.1016/j.parco.2022.102920. short: R. Schade, T. Kenter, H. Elgabarty, M. Lass, O. Schütt, A. Lazzaro, H. Pabst, S. Mohr, J. Hutter, T. Kühne, C. Plessl, Parallel Computing 111 (2022). date_created: 2022-10-11T08:17:02Z date_updated: 2023-08-02T15:03:55Z department: - _id: '613' - _id: '27' - _id: '518' doi: 10.1016/j.parco.2022.102920 intvolume: ' 111' keyword: - Artificial Intelligence - Computer Graphics and Computer-Aided Design - Computer Networks and Communications - Hardware and Architecture - Theoretical Computer Science - Software language: - iso: eng main_file_link: - open_access: '1' url: https://www.sciencedirect.com/science/article/pii/S0167819122000242 oa: '1' project: - _id: '52' name: 'PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing' publication: Parallel Computing publication_identifier: issn: - 0167-8191 publication_status: published publisher: Elsevier BV quality_controlled: '1' status: public title: Towards electronic structure-based ab-initio molecular dynamics simulations with hundreds of millions of atoms type: journal_article user_id: '75963' volume: 111 year: '2022' ... --- _id: '27364' author: - first_name: Marius full_name: Meyer, Marius id: '40778' last_name: Meyer - first_name: Tobias full_name: Kenter, Tobias id: '3145' last_name: Kenter - first_name: Christian full_name: Plessl, Christian id: '16153' last_name: Plessl orcid: 0000-0001-5728-9982 citation: ama: Meyer M, Kenter T, Plessl C. In-depth FPGA Accelerator Performance Evaluation with Single Node Benchmarks from the HPC Challenge Benchmark Suite for Intel and Xilinx FPGAs using OpenCL. Journal of Parallel and Distributed Computing. Published online 2022. doi:10.1016/j.jpdc.2021.10.007 apa: Meyer, M., Kenter, T., & Plessl, C. (2022). In-depth FPGA Accelerator Performance Evaluation with Single Node Benchmarks from the HPC Challenge Benchmark Suite for Intel and Xilinx FPGAs using OpenCL. Journal of Parallel and Distributed Computing. https://doi.org/10.1016/j.jpdc.2021.10.007 bibtex: '@article{Meyer_Kenter_Plessl_2022, title={In-depth FPGA Accelerator Performance Evaluation with Single Node Benchmarks from the HPC Challenge Benchmark Suite for Intel and Xilinx FPGAs using OpenCL}, DOI={10.1016/j.jpdc.2021.10.007}, journal={Journal of Parallel and Distributed Computing}, author={Meyer, Marius and Kenter, Tobias and Plessl, Christian}, year={2022} }' chicago: Meyer, Marius, Tobias Kenter, and Christian Plessl. “In-Depth FPGA Accelerator Performance Evaluation with Single Node Benchmarks from the HPC Challenge Benchmark Suite for Intel and Xilinx FPGAs Using OpenCL.” Journal of Parallel and Distributed Computing, 2022. https://doi.org/10.1016/j.jpdc.2021.10.007. ieee: 'M. Meyer, T. Kenter, and C. Plessl, “In-depth FPGA Accelerator Performance Evaluation with Single Node Benchmarks from the HPC Challenge Benchmark Suite for Intel and Xilinx FPGAs using OpenCL,” Journal of Parallel and Distributed Computing, 2022, doi: 10.1016/j.jpdc.2021.10.007.' mla: Meyer, Marius, et al. “In-Depth FPGA Accelerator Performance Evaluation with Single Node Benchmarks from the HPC Challenge Benchmark Suite for Intel and Xilinx FPGAs Using OpenCL.” Journal of Parallel and Distributed Computing, 2022, doi:10.1016/j.jpdc.2021.10.007. short: M. Meyer, T. Kenter, C. Plessl, Journal of Parallel and Distributed Computing (2022). date_created: 2021-11-10T14:36:27Z date_updated: 2023-09-26T10:26:56Z department: - _id: '27' - _id: '518' doi: 10.1016/j.jpdc.2021.10.007 language: - iso: eng project: - _id: '52' name: Computing Resources Provided by the Paderborn Center for Parallel Computing publication: Journal of Parallel and Distributed Computing publication_identifier: issn: - 0743-7315 publication_status: published quality_controlled: '1' status: public title: In-depth FPGA Accelerator Performance Evaluation with Single Node Benchmarks from the HPC Challenge Benchmark Suite for Intel and Xilinx FPGAs using OpenCL type: journal_article user_id: '15278' year: '2022' ... --- _id: '50146' abstract: - lang: eng text: "Recent advances in numerical methods significantly pushed forward the\r\nunderstanding of electrons coupled to quantized lattice vibrations. At this\r\nstage, it becomes increasingly important to also account for the effects of\r\nphysically inevitable environments. In particular, we study the transport\r\nproperties of the Hubbard-Holstein Hamiltonian that models a large class of\r\nmaterials characterized by strong electron-phonon coupling, in contact with a\r\ndissipative environment. Even in the one-dimensional and isolated case,\r\nsimulating the quantum dynamics of such a system with high accuracy is very\r\nchallenging due to the infinite dimensionality of the phononic Hilbert spaces.\r\nFor this reason, the effects of dissipation on the conductance properties of\r\nsuch systems have not been investigated systematically so far. We combine the\r\nnon-Markovian hierarchy of pure states method and the Markovian quantum jumps\r\nmethod with the newly introduced projected purified density-matrix\r\nrenormalization group, creating powerful tensor-network methods for dissipative\r\nquantum many-body systems. Investigating their numerical properties, we find a\r\nsignificant speedup up to a factor $\\sim 30$ compared to conventional\r\ntensor-network techniques. We apply these methods to study dissipative\r\nquenches, aiming for an in-depth understanding of the formation, stability, and\r\nquasi-particle properties of bipolarons. Surprisingly, our results show that in\r\nthe metallic phase dissipation localizes the bipolarons, which is reminiscent\r\nof an indirect quantum Zeno effect. However, the bipolaronic binding energy\r\nremains mainly unaffected, even in the presence of strong dissipation,\r\nexhibiting remarkable bipolaron stability. These findings shed light on the\r\nproblem of designing real materials exhibiting phonon-mediated\r\nhigh-$T_\\mathrm{C}$ superconductivity." author: - first_name: Mattia full_name: Moroder, Mattia last_name: Moroder - first_name: Martin full_name: Grundner, Martin last_name: Grundner - first_name: François full_name: Damanet, François last_name: Damanet - first_name: Ulrich full_name: Schollwöck, Ulrich last_name: Schollwöck - first_name: Sam full_name: Mardazad, Sam last_name: Mardazad - first_name: Stuart full_name: Flannigan, Stuart last_name: Flannigan - first_name: Thomas full_name: Köhler, Thomas last_name: Köhler - first_name: Sebastian full_name: Paeckel, Sebastian last_name: Paeckel citation: ama: Moroder M, Grundner M, Damanet F, et al. Stable bipolarons in open quantum systems. Physical Review B 107, 214310 (2023). Published online 2022. doi:10.1103/PhysRevB.107.214310 apa: Moroder, M., Grundner, M., Damanet, F., Schollwöck, U., Mardazad, S., Flannigan, S., Köhler, T., & Paeckel, S. (2022). Stable bipolarons in open quantum systems. Physical Review B 107, 214310 (2023). https://doi.org/10.1103/PhysRevB.107.214310 bibtex: '@article{Moroder_Grundner_Damanet_Schollwöck_Mardazad_Flannigan_Köhler_Paeckel_2022, title={Stable bipolarons in open quantum systems}, DOI={10.1103/PhysRevB.107.214310}, journal={Physical Review B 107, 214310 (2023)}, author={Moroder, Mattia and Grundner, Martin and Damanet, François and Schollwöck, Ulrich and Mardazad, Sam and Flannigan, Stuart and Köhler, Thomas and Paeckel, Sebastian}, year={2022} }' chicago: Moroder, Mattia, Martin Grundner, François Damanet, Ulrich Schollwöck, Sam Mardazad, Stuart Flannigan, Thomas Köhler, and Sebastian Paeckel. “Stable Bipolarons in Open Quantum Systems.” Physical Review B 107, 214310 (2023), 2022. https://doi.org/10.1103/PhysRevB.107.214310. ieee: 'M. Moroder et al., “Stable bipolarons in open quantum systems,” Physical Review B 107, 214310 (2023), 2022, doi: 10.1103/PhysRevB.107.214310.' mla: Moroder, Mattia, et al. “Stable Bipolarons in Open Quantum Systems.” Physical Review B 107, 214310 (2023), 2022, doi:10.1103/PhysRevB.107.214310. short: M. Moroder, M. Grundner, F. Damanet, U. Schollwöck, S. Mardazad, S. Flannigan, T. Köhler, S. Paeckel, Physical Review B 107, 214310 (2023) (2022). date_created: 2024-01-04T08:15:28Z date_updated: 2024-01-04T08:15:53Z department: - _id: '27' doi: 10.1103/PhysRevB.107.214310 external_id: arxiv: - '2207.08243' language: - iso: eng project: - _id: '52' name: 'PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing' publication: Physical Review B 107, 214310 (2023) status: public title: Stable bipolarons in open quantum systems type: journal_article user_id: '67287' year: '2022' ... --- _id: '50148' abstract: - lang: eng text: "We develop a general decomposition of an ensemble of initial density profiles\r\nin terms of an average state and a basis of modes that represent the\r\nevent-by-event fluctuations of the initial state. The basis is determined such\r\nthat the probability distributions of the amplitudes of different modes are\r\nuncorrelated. Based on this decomposition, we quantify the different types and\r\nprobabilities of event-by-event fluctuations in Glauber and Saturation models\r\nand investigate how the various modes affect different characteristics of the\r\ninitial state. We perform simulations of the dynamical evolution with KoMPoST\r\nand MUSIC to investigate the impact of the modes on final-state observables and\r\ntheir correlations." author: - first_name: Nicolas full_name: Borghini, Nicolas last_name: Borghini - first_name: Marc full_name: Borrell, Marc last_name: Borrell - first_name: Nina full_name: Feld, Nina last_name: Feld - first_name: Hendrik full_name: Roch, Hendrik last_name: Roch - first_name: Sören full_name: Schlichting, Sören last_name: Schlichting - first_name: Clemens full_name: Werthmann, Clemens last_name: Werthmann citation: ama: Borghini N, Borrell M, Feld N, Roch H, Schlichting S, Werthmann C. Statistical analysis of initial state and final state response in  heavy-ion collisions. Phys Rev C 107 (2023) 034905. Published online 2022. doi:10.1103/PhysRevC.107.034905 apa: Borghini, N., Borrell, M., Feld, N., Roch, H., Schlichting, S., & Werthmann, C. (2022). Statistical analysis of initial state and final state response in  heavy-ion collisions. Phys. Rev. C 107 (2023) 034905. https://doi.org/10.1103/PhysRevC.107.034905 bibtex: '@article{Borghini_Borrell_Feld_Roch_Schlichting_Werthmann_2022, title={Statistical analysis of initial state and final state response in  heavy-ion collisions}, DOI={10.1103/PhysRevC.107.034905}, journal={Phys. Rev. C 107 (2023) 034905}, author={Borghini, Nicolas and Borrell, Marc and Feld, Nina and Roch, Hendrik and Schlichting, Sören and Werthmann, Clemens}, year={2022} }' chicago: Borghini, Nicolas, Marc Borrell, Nina Feld, Hendrik Roch, Sören Schlichting, and Clemens Werthmann. “Statistical Analysis of Initial State and Final State Response in  Heavy-Ion Collisions.” Phys. Rev. C 107 (2023) 034905, 2022. https://doi.org/10.1103/PhysRevC.107.034905. ieee: 'N. Borghini, M. Borrell, N. Feld, H. Roch, S. Schlichting, and C. Werthmann, “Statistical analysis of initial state and final state response in  heavy-ion collisions,” Phys. Rev. C 107 (2023) 034905, 2022, doi: 10.1103/PhysRevC.107.034905.' mla: Borghini, Nicolas, et al. “Statistical Analysis of Initial State and Final State Response in  Heavy-Ion Collisions.” Phys. Rev. C 107 (2023) 034905, 2022, doi:10.1103/PhysRevC.107.034905. short: N. Borghini, M. Borrell, N. Feld, H. Roch, S. Schlichting, C. Werthmann, Phys. Rev. C 107 (2023) 034905 (2022). date_created: 2024-01-04T08:18:29Z date_updated: 2024-01-04T08:18:45Z department: - _id: '27' doi: 10.1103/PhysRevC.107.034905 external_id: arxiv: - '2209.01176' language: - iso: eng project: - _id: '52' name: 'PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing' publication: Phys. Rev. C 107 (2023) 034905 status: public title: Statistical analysis of initial state and final state response in heavy-ion collisions type: journal_article user_id: '67287' year: '2022' ... --- _id: '50149' abstract: - lang: eng text: "Abstract\r\n RNA editing processes are strikingly different in animals and plants. Up to thousands of specific cytidines are converted into uridines in plant chloroplasts and mitochondria whereas up to millions of adenosines are converted into inosines in animal nucleo-cytosolic RNAs. It is unknown whether these two different RNA editing machineries are mutually incompatible. RNA-binding pentatricopeptide repeat (PPR) proteins are the key factors of plant organelle cytidine-to-uridine RNA editing. The complete absence of PPR mediated editing of cytosolic RNAs might be due to a yet unknown barrier that prevents its activity in the cytosol. Here, we transferred two plant mitochondrial PPR-type editing factors into human cell lines to explore whether they could operate in the nucleo-cytosolic environment. PPR56 and PPR65 not only faithfully edited their native, co-transcribed targets but also different sets of off-targets in the human background transcriptome. More than 900 of such off-targets with editing efficiencies up to 91%, largely explained by known PPR-RNA binding properties, were identified for PPR56. Engineering two crucial amino acid positions in its PPR array led to predictable shifts in target recognition. We conclude that plant PPR editing factors can operate in the entirely different genetic environment of the human nucleo-cytosol and can be intentionally re-engineered towards new targets." author: - first_name: Elena full_name: Lesch, Elena last_name: Lesch - first_name: Maximilian T full_name: Schilling, Maximilian T last_name: Schilling - first_name: Sarah full_name: Brenner, Sarah last_name: Brenner - first_name: Yingying full_name: Yang, Yingying last_name: Yang - first_name: Oliver J full_name: Gruss, Oliver J last_name: Gruss - first_name: Volker full_name: Knoop, Volker last_name: Knoop - first_name: Mareike full_name: Schallenberg-Rüdinger, Mareike last_name: Schallenberg-Rüdinger citation: ama: Lesch E, Schilling MT, Brenner S, et al. Plant mitochondrial RNA editing factors can perform targeted C-to-U editing of nuclear transcripts in human cells. Nucleic Acids Research. 2022;50(17):9966-9983. doi:10.1093/nar/gkac752 apa: Lesch, E., Schilling, M. T., Brenner, S., Yang, Y., Gruss, O. J., Knoop, V., & Schallenberg-Rüdinger, M. (2022). Plant mitochondrial RNA editing factors can perform targeted C-to-U editing of nuclear transcripts in human cells. Nucleic Acids Research, 50(17), 9966–9983. https://doi.org/10.1093/nar/gkac752 bibtex: '@article{Lesch_Schilling_Brenner_Yang_Gruss_Knoop_Schallenberg-Rüdinger_2022, title={Plant mitochondrial RNA editing factors can perform targeted C-to-U editing of nuclear transcripts in human cells}, volume={50}, DOI={10.1093/nar/gkac752}, number={17}, journal={Nucleic Acids Research}, publisher={Oxford University Press (OUP)}, author={Lesch, Elena and Schilling, Maximilian T and Brenner, Sarah and Yang, Yingying and Gruss, Oliver J and Knoop, Volker and Schallenberg-Rüdinger, Mareike}, year={2022}, pages={9966–9983} }' chicago: 'Lesch, Elena, Maximilian T Schilling, Sarah Brenner, Yingying Yang, Oliver J Gruss, Volker Knoop, and Mareike Schallenberg-Rüdinger. “Plant Mitochondrial RNA Editing Factors Can Perform Targeted C-to-U Editing of Nuclear Transcripts in Human Cells.” Nucleic Acids Research 50, no. 17 (2022): 9966–83. https://doi.org/10.1093/nar/gkac752.' ieee: 'E. Lesch et al., “Plant mitochondrial RNA editing factors can perform targeted C-to-U editing of nuclear transcripts in human cells,” Nucleic Acids Research, vol. 50, no. 17, pp. 9966–9983, 2022, doi: 10.1093/nar/gkac752.' mla: Lesch, Elena, et al. “Plant Mitochondrial RNA Editing Factors Can Perform Targeted C-to-U Editing of Nuclear Transcripts in Human Cells.” Nucleic Acids Research, vol. 50, no. 17, Oxford University Press (OUP), 2022, pp. 9966–83, doi:10.1093/nar/gkac752. short: E. Lesch, M.T. Schilling, S. Brenner, Y. Yang, O.J. Gruss, V. Knoop, M. Schallenberg-Rüdinger, Nucleic Acids Research 50 (2022) 9966–9983. date_created: 2024-01-04T08:23:01Z date_updated: 2024-01-04T08:23:13Z department: - _id: '27' doi: 10.1093/nar/gkac752 intvolume: ' 50' issue: '17' keyword: - Genetics language: - iso: eng page: 9966-9983 project: - _id: '52' name: 'PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing' publication: Nucleic Acids Research publication_identifier: issn: - 0305-1048 - 1362-4962 publication_status: published publisher: Oxford University Press (OUP) status: public title: Plant mitochondrial RNA editing factors can perform targeted C-to-U editing of nuclear transcripts in human cells type: journal_article user_id: '67287' volume: 50 year: '2022' ... --- _id: '28099' abstract: - lang: eng text: N-body methods are one of the essential algorithmic building blocks of high-performance and parallel computing. Previous research has shown promising performance for implementing n-body simulations with pairwise force calculations on FPGAs. However, to avoid challenges with accumulation and memory access patterns, the presented designs calculate each pair of forces twice, along with both force sums of the involved particles. Also, they require large problem instances with hundreds of thousands of particles to reach their respective peak performance, limiting the applicability for strong scaling scenarios. This work addresses both issues by presenting a novel FPGA design that uses each calculated force twice and overlaps data transfers and computations in a way that allows to reach peak performance even for small problem instances, outperforming previous single precision results even in double precision, and scaling linearly over multiple interconnected FPGAs. For a comparison across architectures, we provide an equally optimized CPU reference, which for large problems actually achieves higher peak performance per device, however, given the strong scaling advantages of the FPGA design, in parallel setups with few thousand particles per device, the FPGA platform achieves highest performance and power efficiency. article_type: original author: - first_name: Johannes full_name: Menzel, Johannes last_name: Menzel - first_name: Christian full_name: Plessl, Christian id: '16153' last_name: Plessl orcid: 0000-0001-5728-9982 - first_name: Tobias full_name: Kenter, Tobias id: '3145' last_name: Kenter citation: ama: Menzel J, Plessl C, Kenter T. The Strong Scaling Advantage of FPGAs in HPC for N-body Simulations. ACM Transactions on Reconfigurable Technology and Systems. 2021;15(1):1-30. doi:10.1145/3491235 apa: Menzel, J., Plessl, C., & Kenter, T. (2021). The Strong Scaling Advantage of FPGAs in HPC for N-body Simulations. ACM Transactions on Reconfigurable Technology and Systems, 15(1), 1–30. https://doi.org/10.1145/3491235 bibtex: '@article{Menzel_Plessl_Kenter_2021, title={The Strong Scaling Advantage of FPGAs in HPC for N-body Simulations}, volume={15}, DOI={10.1145/3491235}, number={1}, journal={ACM Transactions on Reconfigurable Technology and Systems}, author={Menzel, Johannes and Plessl, Christian and Kenter, Tobias}, year={2021}, pages={1–30} }' chicago: 'Menzel, Johannes, Christian Plessl, and Tobias Kenter. “The Strong Scaling Advantage of FPGAs in HPC for N-Body Simulations.” ACM Transactions on Reconfigurable Technology and Systems 15, no. 1 (2021): 1–30. https://doi.org/10.1145/3491235.' ieee: 'J. Menzel, C. Plessl, and T. Kenter, “The Strong Scaling Advantage of FPGAs in HPC for N-body Simulations,” ACM Transactions on Reconfigurable Technology and Systems, vol. 15, no. 1, pp. 1–30, 2021, doi: 10.1145/3491235.' mla: Menzel, Johannes, et al. “The Strong Scaling Advantage of FPGAs in HPC for N-Body Simulations.” ACM Transactions on Reconfigurable Technology and Systems, vol. 15, no. 1, 2021, pp. 1–30, doi:10.1145/3491235. short: J. Menzel, C. Plessl, T. Kenter, ACM Transactions on Reconfigurable Technology and Systems 15 (2021) 1–30. date_created: 2021-11-30T10:00:31Z date_updated: 2022-01-06T06:57:51Z department: - _id: '27' - _id: '518' doi: 10.1145/3491235 intvolume: ' 15' issue: '1' language: - iso: eng main_file_link: - open_access: '1' url: https://dl.acm.org/doi/10.1145/3491235 oa: '1' page: 1-30 publication: ACM Transactions on Reconfigurable Technology and Systems publication_identifier: issn: - 1936-7406 - 1936-7414 publication_status: published quality_controlled: '1' status: public title: The Strong Scaling Advantage of FPGAs in HPC for N-body Simulations type: journal_article user_id: '3145' volume: 15 year: '2021' ... --- _id: '32243' abstract: - lang: eng text: "Abstract\r\n The defining feature of active particles is that they constantly propel themselves by locally converting chemical energy into directed motion. This active self-propulsion prevents them from equilibrating with their thermal environment (e.g. an aqueous solution), thus keeping them permanently out of equilibrium. Nevertheless, the spatial dynamics of active particles might share certain equilibrium features, in particular in the steady state. We here focus on the time-reversal symmetry of individual spatial trajectories as a distinct equilibrium characteristic. We investigate to what extent the steady-state trajectories of a trapped active particle obey or break this time-reversal symmetry. Within the framework of active Ornstein–Uhlenbeck particles we find that the steady-state trajectories in a harmonic potential fulfill path-wise time-reversal symmetry exactly, while this symmetry is typically broken in anharmonic potentials." article_number: '033216' author: - first_name: Lennart full_name: Dabelow, Lennart last_name: Dabelow - first_name: Stefano full_name: Bo, Stefano last_name: Bo - first_name: Ralf full_name: Eichhorn, Ralf last_name: Eichhorn citation: ama: 'Dabelow L, Bo S, Eichhorn R. How irreversible are steady-state trajectories of a trapped active particle? Journal of Statistical Mechanics: Theory and Experiment. 2021;2021(3). doi:10.1088/1742-5468/abe6fd' apa: 'Dabelow, L., Bo, S., & Eichhorn, R. (2021). How irreversible are steady-state trajectories of a trapped active particle? Journal of Statistical Mechanics: Theory and Experiment, 2021(3), Article 033216. https://doi.org/10.1088/1742-5468/abe6fd' bibtex: '@article{Dabelow_Bo_Eichhorn_2021, title={How irreversible are steady-state trajectories of a trapped active particle?}, volume={2021}, DOI={10.1088/1742-5468/abe6fd}, number={3033216}, journal={Journal of Statistical Mechanics: Theory and Experiment}, publisher={IOP Publishing}, author={Dabelow, Lennart and Bo, Stefano and Eichhorn, Ralf}, year={2021} }' chicago: 'Dabelow, Lennart, Stefano Bo, and Ralf Eichhorn. “How Irreversible Are Steady-State Trajectories of a Trapped Active Particle?” Journal of Statistical Mechanics: Theory and Experiment 2021, no. 3 (2021). https://doi.org/10.1088/1742-5468/abe6fd.' ieee: 'L. Dabelow, S. Bo, and R. Eichhorn, “How irreversible are steady-state trajectories of a trapped active particle?,” Journal of Statistical Mechanics: Theory and Experiment, vol. 2021, no. 3, Art. no. 033216, 2021, doi: 10.1088/1742-5468/abe6fd.' mla: 'Dabelow, Lennart, et al. “How Irreversible Are Steady-State Trajectories of a Trapped Active Particle?” Journal of Statistical Mechanics: Theory and Experiment, vol. 2021, no. 3, 033216, IOP Publishing, 2021, doi:10.1088/1742-5468/abe6fd.' short: 'L. Dabelow, S. Bo, R. Eichhorn, Journal of Statistical Mechanics: Theory and Experiment 2021 (2021).' date_created: 2022-06-28T07:27:41Z date_updated: 2022-06-28T07:28:14Z department: - _id: '27' doi: 10.1088/1742-5468/abe6fd intvolume: ' 2021' issue: '3' keyword: - Statistics - Probability and Uncertainty - Statistics and Probability - Statistical and Nonlinear Physics language: - iso: eng project: - _id: '52' name: 'PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing' publication: 'Journal of Statistical Mechanics: Theory and Experiment' publication_identifier: issn: - 1742-5468 publication_status: published publisher: IOP Publishing status: public title: How irreversible are steady-state trajectories of a trapped active particle? type: journal_article user_id: '15278' volume: 2021 year: '2021' ... --- _id: '46122' article_number: '094518' author: - first_name: Olaf full_name: Kaczmarek, Olaf last_name: Kaczmarek - first_name: Lukas full_name: Mazur, Lukas id: '90492' last_name: Mazur orcid: ' 0000-0001-6304-7082' - first_name: Sayantan full_name: Sharma, Sayantan last_name: Sharma citation: ama: Kaczmarek O, Mazur L, Sharma S. Eigenvalue spectra of QCD and the fate of <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML" display="inline"><mml:msub><mml:mi>U</mml:mi><mml:mi>A</mml:mi></mml:msub><mml:mo stretchy="false">(</mml:mo><mml:mn>1</mml:mn><mml:mo stretchy="false">)</mml:mo></mml:math> breaking towards the chiral limit. Physical Review D. 2021;104(9). doi:10.1103/physrevd.104.094518 apa: Kaczmarek, O., Mazur, L., & Sharma, S. (2021). Eigenvalue spectra of QCD and the fate of <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML" display="inline"><mml:msub><mml:mi>U</mml:mi><mml:mi>A</mml:mi></mml:msub><mml:mo stretchy="false">(</mml:mo><mml:mn>1</mml:mn><mml:mo stretchy="false">)</mml:mo></mml:math> breaking towards the chiral limit. Physical Review D, 104(9), Article 094518. https://doi.org/10.1103/physrevd.104.094518 bibtex: '@article{Kaczmarek_Mazur_Sharma_2021, title={Eigenvalue spectra of QCD and the fate of <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML" display="inline"><mml:msub><mml:mi>U</mml:mi><mml:mi>A</mml:mi></mml:msub><mml:mo stretchy="false">(</mml:mo><mml:mn>1</mml:mn><mml:mo stretchy="false">)</mml:mo></mml:math> breaking towards the chiral limit}, volume={104}, DOI={10.1103/physrevd.104.094518}, number={9094518}, journal={Physical Review D}, publisher={American Physical Society (APS)}, author={Kaczmarek, Olaf and Mazur, Lukas and Sharma, Sayantan}, year={2021} }' chicago: Kaczmarek, Olaf, Lukas Mazur, and Sayantan Sharma. “Eigenvalue Spectra of QCD and the Fate of <mml:Math Xmlns:Mml="http://Www.W3.Org/1998/Math/MathML" Display="inline"><mml:Msub><mml:Mi>U</Mml:Mi><mml:Mi>A</Mml:Mi></Mml:Msub><mml:Mo Stretchy="false">(</Mml:Mo><mml:Mn>1</Mml:Mn><mml:Mo Stretchy="false">)</Mml:Mo></Mml:Math> Breaking towards the Chiral Limit.” Physical Review D 104, no. 9 (2021). https://doi.org/10.1103/physrevd.104.094518. ieee: 'O. Kaczmarek, L. Mazur, and S. Sharma, “Eigenvalue spectra of QCD and the fate of <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML" display="inline"><mml:msub><mml:mi>U</mml:mi><mml:mi>A</mml:mi></mml:msub><mml:mo stretchy="false">(</mml:mo><mml:mn>1</mml:mn><mml:mo stretchy="false">)</mml:mo></mml:math> breaking towards the chiral limit,” Physical Review D, vol. 104, no. 9, Art. no. 094518, 2021, doi: 10.1103/physrevd.104.094518.' mla: Kaczmarek, Olaf, et al. “Eigenvalue Spectra of QCD and the Fate of <mml:Math Xmlns:Mml="http://Www.W3.Org/1998/Math/MathML" Display="inline"><mml:Msub><mml:Mi>U</Mml:Mi><mml:Mi>A</Mml:Mi></Mml:Msub><mml:Mo Stretchy="false">(</Mml:Mo><mml:Mn>1</Mml:Mn><mml:Mo Stretchy="false">)</Mml:Mo></Mml:Math> Breaking towards the Chiral Limit.” Physical Review D, vol. 104, no. 9, 094518, American Physical Society (APS), 2021, doi:10.1103/physrevd.104.094518. short: O. Kaczmarek, L. Mazur, S. Sharma, Physical Review D 104 (2021). date_created: 2023-07-24T11:03:06Z date_updated: 2023-07-26T09:23:02Z department: - _id: '27' doi: 10.1103/physrevd.104.094518 extern: '1' intvolume: ' 104' issue: '9' language: - iso: eng publication: Physical Review D publication_identifier: issn: - 2470-0010 - 2470-0029 publication_status: published publisher: American Physical Society (APS) quality_controlled: '1' status: public title: Eigenvalue spectra of QCD and the fate of UA(1) breaking towards the chiral limit type: journal_article user_id: '90492' volume: 104 year: '2021' ... --- _id: '46124' article_number: '014511' author: - first_name: Luis full_name: Altenkort, Luis last_name: Altenkort - first_name: Alexander M. full_name: Eller, Alexander M. last_name: Eller - first_name: O. full_name: Kaczmarek, O. last_name: Kaczmarek - first_name: Lukas full_name: Mazur, Lukas id: '90492' last_name: Mazur orcid: ' 0000-0001-6304-7082' - first_name: Guy D. full_name: Moore, Guy D. last_name: Moore - first_name: H.-T. full_name: Shu, H.-T. last_name: Shu citation: ama: Altenkort L, Eller AM, Kaczmarek O, Mazur L, Moore GD, Shu H-T. Heavy quark momentum diffusion from the lattice using gradient flow. Physical Review D. 2021;103(1). doi:10.1103/physrevd.103.014511 apa: Altenkort, L., Eller, A. M., Kaczmarek, O., Mazur, L., Moore, G. D., & Shu, H.-T. (2021). Heavy quark momentum diffusion from the lattice using gradient flow. Physical Review D, 103(1), Article 014511. https://doi.org/10.1103/physrevd.103.014511 bibtex: '@article{Altenkort_Eller_Kaczmarek_Mazur_Moore_Shu_2021, title={Heavy quark momentum diffusion from the lattice using gradient flow}, volume={103}, DOI={10.1103/physrevd.103.014511}, number={1014511}, journal={Physical Review D}, publisher={American Physical Society (APS)}, author={Altenkort, Luis and Eller, Alexander M. and Kaczmarek, O. and Mazur, Lukas and Moore, Guy D. and Shu, H.-T.}, year={2021} }' chicago: Altenkort, Luis, Alexander M. Eller, O. Kaczmarek, Lukas Mazur, Guy D. Moore, and H.-T. Shu. “Heavy Quark Momentum Diffusion from the Lattice Using Gradient Flow.” Physical Review D 103, no. 1 (2021). https://doi.org/10.1103/physrevd.103.014511. ieee: 'L. Altenkort, A. M. Eller, O. Kaczmarek, L. Mazur, G. D. Moore, and H.-T. Shu, “Heavy quark momentum diffusion from the lattice using gradient flow,” Physical Review D, vol. 103, no. 1, Art. no. 014511, 2021, doi: 10.1103/physrevd.103.014511.' mla: Altenkort, Luis, et al. “Heavy Quark Momentum Diffusion from the Lattice Using Gradient Flow.” Physical Review D, vol. 103, no. 1, 014511, American Physical Society (APS), 2021, doi:10.1103/physrevd.103.014511. short: L. Altenkort, A.M. Eller, O. Kaczmarek, L. Mazur, G.D. Moore, H.-T. Shu, Physical Review D 103 (2021). date_created: 2023-07-24T11:05:25Z date_updated: 2023-07-26T09:22:09Z department: - _id: '27' doi: 10.1103/physrevd.103.014511 extern: '1' intvolume: ' 103' issue: '1' language: - iso: eng publication: Physical Review D publication_identifier: issn: - 2470-0010 - 2470-0029 publication_status: published publisher: American Physical Society (APS) quality_controlled: '1' status: public title: Heavy quark momentum diffusion from the lattice using gradient flow type: journal_article user_id: '90492' volume: 103 year: '2021' ... --- _id: '46123' article_number: '114513' author: - first_name: Luis full_name: Altenkort, Luis last_name: Altenkort - first_name: Alexander M. full_name: Eller, Alexander M. last_name: Eller - first_name: O. full_name: Kaczmarek, O. last_name: Kaczmarek - first_name: Lukas full_name: Mazur, Lukas id: '90492' last_name: Mazur orcid: ' 0000-0001-6304-7082' - first_name: Guy D. full_name: Moore, Guy D. last_name: Moore - first_name: H.-T. full_name: Shu, H.-T. last_name: Shu citation: ama: 'Altenkort L, Eller AM, Kaczmarek O, Mazur L, Moore GD, Shu H-T. Sphaleron rate from Euclidean lattice correlators: An exploration. Physical Review D. 2021;103(11). doi:10.1103/physrevd.103.114513' apa: 'Altenkort, L., Eller, A. M., Kaczmarek, O., Mazur, L., Moore, G. D., & Shu, H.-T. (2021). Sphaleron rate from Euclidean lattice correlators: An exploration. Physical Review D, 103(11), Article 114513. https://doi.org/10.1103/physrevd.103.114513' bibtex: '@article{Altenkort_Eller_Kaczmarek_Mazur_Moore_Shu_2021, title={Sphaleron rate from Euclidean lattice correlators: An exploration}, volume={103}, DOI={10.1103/physrevd.103.114513}, number={11114513}, journal={Physical Review D}, publisher={American Physical Society (APS)}, author={Altenkort, Luis and Eller, Alexander M. and Kaczmarek, O. and Mazur, Lukas and Moore, Guy D. and Shu, H.-T.}, year={2021} }' chicago: 'Altenkort, Luis, Alexander M. Eller, O. Kaczmarek, Lukas Mazur, Guy D. Moore, and H.-T. Shu. “Sphaleron Rate from Euclidean Lattice Correlators: An Exploration.” Physical Review D 103, no. 11 (2021). https://doi.org/10.1103/physrevd.103.114513.' ieee: 'L. Altenkort, A. M. Eller, O. Kaczmarek, L. Mazur, G. D. Moore, and H.-T. Shu, “Sphaleron rate from Euclidean lattice correlators: An exploration,” Physical Review D, vol. 103, no. 11, Art. no. 114513, 2021, doi: 10.1103/physrevd.103.114513.' mla: 'Altenkort, Luis, et al. “Sphaleron Rate from Euclidean Lattice Correlators: An Exploration.” Physical Review D, vol. 103, no. 11, 114513, American Physical Society (APS), 2021, doi:10.1103/physrevd.103.114513.' short: L. Altenkort, A.M. Eller, O. Kaczmarek, L. Mazur, G.D. Moore, H.-T. Shu, Physical Review D 103 (2021). date_created: 2023-07-24T11:04:17Z date_updated: 2023-07-26T09:22:46Z department: - _id: '27' doi: 10.1103/physrevd.103.114513 extern: '1' intvolume: ' 103' issue: '11' language: - iso: eng publication: Physical Review D publication_identifier: issn: - 2470-0010 - 2470-0029 publication_status: published publisher: American Physical Society (APS) quality_controlled: '1' status: public title: 'Sphaleron rate from Euclidean lattice correlators: An exploration' type: journal_article user_id: '90492' volume: 103 year: '2021' ... --- _id: '24788' author: - first_name: Samer full_name: Alhaddad, Samer id: '42456' last_name: Alhaddad - first_name: Jens full_name: Förstner, Jens id: '158' last_name: Förstner orcid: 0000-0001-7059-9862 - first_name: Stefan full_name: Groth, Stefan last_name: Groth - first_name: Daniel full_name: Grünewald, Daniel last_name: Grünewald - first_name: Yevgen full_name: Grynko, Yevgen id: '26059' last_name: Grynko - first_name: Frank full_name: Hannig, Frank last_name: Hannig - first_name: Tobias full_name: Kenter, Tobias id: '3145' last_name: Kenter - first_name: Franz‐Josef full_name: Pfreundt, Franz‐Josef last_name: Pfreundt - first_name: Christian full_name: Plessl, Christian id: '16153' last_name: Plessl orcid: 0000-0001-5728-9982 - first_name: Merlind full_name: Schotte, Merlind last_name: Schotte - first_name: Thomas full_name: Steinke, Thomas last_name: Steinke - first_name: Jürgen full_name: Teich, Jürgen last_name: Teich - first_name: Martin full_name: Weiser, Martin last_name: Weiser - first_name: Florian full_name: Wende, Florian last_name: Wende citation: ama: 'Alhaddad S, Förstner J, Groth S, et al. The HighPerMeshes framework for numerical algorithms on unstructured grids. Concurrency and Computation: Practice and Experience. Published online 2021:e6616. doi:10.1002/cpe.6616' apa: 'Alhaddad, S., Förstner, J., Groth, S., Grünewald, D., Grynko, Y., Hannig, F., Kenter, T., Pfreundt, F., Plessl, C., Schotte, M., Steinke, T., Teich, J., Weiser, M., & Wende, F. (2021). The HighPerMeshes framework for numerical algorithms on unstructured grids. Concurrency and Computation: Practice and Experience, e6616. https://doi.org/10.1002/cpe.6616' bibtex: '@article{Alhaddad_Förstner_Groth_Grünewald_Grynko_Hannig_Kenter_Pfreundt_Plessl_Schotte_et al._2021, title={The HighPerMeshes framework for numerical algorithms on unstructured grids}, DOI={10.1002/cpe.6616}, journal={Concurrency and Computation: Practice and Experience}, author={Alhaddad, Samer and Förstner, Jens and Groth, Stefan and Grünewald, Daniel and Grynko, Yevgen and Hannig, Frank and Kenter, Tobias and Pfreundt, Franz‐Josef and Plessl, Christian and Schotte, Merlind and et al.}, year={2021}, pages={e6616} }' chicago: 'Alhaddad, Samer, Jens Förstner, Stefan Groth, Daniel Grünewald, Yevgen Grynko, Frank Hannig, Tobias Kenter, et al. “The HighPerMeshes Framework for Numerical Algorithms on Unstructured Grids.” Concurrency and Computation: Practice and Experience, 2021, e6616. https://doi.org/10.1002/cpe.6616.' ieee: 'S. Alhaddad et al., “The HighPerMeshes framework for numerical algorithms on unstructured grids,” Concurrency and Computation: Practice and Experience, p. e6616, 2021, doi: 10.1002/cpe.6616.' mla: 'Alhaddad, Samer, et al. “The HighPerMeshes Framework for Numerical Algorithms on Unstructured Grids.” Concurrency and Computation: Practice and Experience, 2021, p. e6616, doi:10.1002/cpe.6616.' short: 'S. Alhaddad, J. Förstner, S. Groth, D. Grünewald, Y. Grynko, F. Hannig, T. Kenter, F. Pfreundt, C. Plessl, M. Schotte, T. Steinke, J. Teich, M. Weiser, F. Wende, Concurrency and Computation: Practice and Experience (2021) e6616.' date_created: 2021-09-22T06:15:50Z date_updated: 2023-09-26T11:42:19Z ddc: - '004' department: - _id: '61' - _id: '230' - _id: '27' - _id: '518' doi: 10.1002/cpe.6616 file: - access_level: open_access content_type: application/pdf creator: fossie date_created: 2021-09-22T06:19:29Z date_updated: 2021-09-22T06:19:29Z file_id: '24789' file_name: 2021-09 Alhaddad - Concurrency... - The HighPerMeshes framework for numerical algorithms on unstructured grids.pdf file_size: 2300152 relation: main_file file_date_updated: 2021-09-22T06:19:29Z has_accepted_license: '1' keyword: - tet_topic_hpc language: - iso: eng oa: '1' page: e6616 project: - _id: '52' name: Computing Resources Provided by the Paderborn Center for Parallel Computing - _id: '33' grant_number: 01|H16005A name: HighPerMeshes publication: 'Concurrency and Computation: Practice and Experience' publication_identifier: issn: - 1532-0626 - 1532-0634 publication_status: published quality_controlled: '1' status: public title: The HighPerMeshes framework for numerical algorithms on unstructured grids type: journal_article user_id: '15278' year: '2021' ...