---
_id: '46188'
author:
- first_name: Jennifer
full_name: Faj, Jennifer
id: '78722'
last_name: Faj
- first_name: Tobias
full_name: Kenter, Tobias
id: '3145'
last_name: Kenter
- first_name: Sara
full_name: Faghih-Naini, Sara
last_name: Faghih-Naini
- first_name: Christian
full_name: Plessl, Christian
id: '16153'
last_name: Plessl
orcid: 0000-0001-5728-9982
- first_name: Vadym
full_name: Aizinger, Vadym
last_name: Aizinger
citation:
ama: 'Faj J, Kenter T, Faghih-Naini S, Plessl C, Aizinger V. Scalable Multi-FPGA
Design of a Discontinuous Galerkin Shallow-Water Model on Unstructured Meshes.
In: Proceedings of the Platform for Advanced Scientific Computing Conference
(PASC). ACM; 2023. doi:10.1145/3592979.3593407'
apa: Faj, J., Kenter, T., Faghih-Naini, S., Plessl, C., & Aizinger, V. (2023).
Scalable Multi-FPGA Design of a Discontinuous Galerkin Shallow-Water Model on
Unstructured Meshes. Proceedings of the Platform for Advanced Scientific Computing
Conference (PASC). https://doi.org/10.1145/3592979.3593407
bibtex: '@inproceedings{Faj_Kenter_Faghih-Naini_Plessl_Aizinger_2023, title={Scalable
Multi-FPGA Design of a Discontinuous Galerkin Shallow-Water Model on Unstructured
Meshes}, DOI={10.1145/3592979.3593407},
booktitle={Proceedings of the Platform for Advanced Scientific Computing Conference
(PASC)}, publisher={ACM}, author={Faj, Jennifer and Kenter, Tobias and Faghih-Naini,
Sara and Plessl, Christian and Aizinger, Vadym}, year={2023} }'
chicago: Faj, Jennifer, Tobias Kenter, Sara Faghih-Naini, Christian Plessl, and
Vadym Aizinger. “Scalable Multi-FPGA Design of a Discontinuous Galerkin Shallow-Water
Model on Unstructured Meshes.” In Proceedings of the Platform for Advanced
Scientific Computing Conference (PASC). ACM, 2023. https://doi.org/10.1145/3592979.3593407.
ieee: 'J. Faj, T. Kenter, S. Faghih-Naini, C. Plessl, and V. Aizinger, “Scalable
Multi-FPGA Design of a Discontinuous Galerkin Shallow-Water Model on Unstructured
Meshes,” 2023, doi: 10.1145/3592979.3593407.'
mla: Faj, Jennifer, et al. “Scalable Multi-FPGA Design of a Discontinuous Galerkin
Shallow-Water Model on Unstructured Meshes.” Proceedings of the Platform for
Advanced Scientific Computing Conference (PASC), ACM, 2023, doi:10.1145/3592979.3593407.
short: 'J. Faj, T. Kenter, S. Faghih-Naini, C. Plessl, V. Aizinger, in: Proceedings
of the Platform for Advanced Scientific Computing Conference (PASC), ACM, 2023.'
date_created: 2023-07-28T09:42:14Z
date_updated: 2024-04-17T08:09:39Z
department:
- _id: '27'
- _id: '518'
doi: 10.1145/3592979.3593407
language:
- iso: eng
main_file_link:
- url: https://dl.acm.org/doi/pdf/10.1145/3592979.3593407
project:
- _id: '52'
name: 'PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing'
publication: Proceedings of the Platform for Advanced Scientific Computing Conference
(PASC)
publication_status: published
publisher: ACM
quality_controlled: '1'
related_material:
link:
- description: Open Access available via this link.
relation: other
url: https://www.sighpc.org/for-our-community/acm-open-tocs/pasc23-open-toc
status: public
title: Scalable Multi-FPGA Design of a Discontinuous Galerkin Shallow-Water Model
on Unstructured Meshes
type: conference
user_id: '3145'
year: '2023'
...
---
_id: '46189'
author:
- first_name: Charles
full_name: Prouveur, Charles
last_name: Prouveur
- first_name: Matthieu
full_name: Haefele, Matthieu
last_name: Haefele
- first_name: Tobias
full_name: Kenter, Tobias
id: '3145'
last_name: Kenter
- first_name: Nils
full_name: Voss, Nils
last_name: Voss
citation:
ama: 'Prouveur C, Haefele M, Kenter T, Voss N. FPGA Acceleration for HPC Supercapacitor
Simulations. In: Proceedings of the Platform for Advanced Scientific Computing
Conference (PASC). ACM; 2023. doi:10.1145/3592979.3593419'
apa: Prouveur, C., Haefele, M., Kenter, T., & Voss, N. (2023). FPGA Acceleration
for HPC Supercapacitor Simulations. Proceedings of the Platform for Advanced
Scientific Computing Conference (PASC). https://doi.org/10.1145/3592979.3593419
bibtex: '@inproceedings{Prouveur_Haefele_Kenter_Voss_2023, title={FPGA Acceleration
for HPC Supercapacitor Simulations}, DOI={10.1145/3592979.3593419},
booktitle={Proceedings of the Platform for Advanced Scientific Computing Conference
(PASC)}, publisher={ACM}, author={Prouveur, Charles and Haefele, Matthieu and
Kenter, Tobias and Voss, Nils}, year={2023} }'
chicago: Prouveur, Charles, Matthieu Haefele, Tobias Kenter, and Nils Voss. “FPGA
Acceleration for HPC Supercapacitor Simulations.” In Proceedings of the Platform
for Advanced Scientific Computing Conference (PASC). ACM, 2023. https://doi.org/10.1145/3592979.3593419.
ieee: 'C. Prouveur, M. Haefele, T. Kenter, and N. Voss, “FPGA Acceleration for HPC
Supercapacitor Simulations,” 2023, doi: 10.1145/3592979.3593419.'
mla: Prouveur, Charles, et al. “FPGA Acceleration for HPC Supercapacitor Simulations.”
Proceedings of the Platform for Advanced Scientific Computing Conference (PASC),
ACM, 2023, doi:10.1145/3592979.3593419.
short: 'C. Prouveur, M. Haefele, T. Kenter, N. Voss, in: Proceedings of the Platform
for Advanced Scientific Computing Conference (PASC), ACM, 2023.'
date_created: 2023-07-28T09:46:25Z
date_updated: 2024-04-17T08:10:51Z
department:
- _id: '27'
- _id: '518'
doi: 10.1145/3592979.3593419
language:
- iso: eng
main_file_link:
- url: https://dl.acm.org/doi/pdf/10.1145/3592979.3593419
project:
- _id: '52'
name: 'PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing'
publication: Proceedings of the Platform for Advanced Scientific Computing Conference
(PASC)
publication_status: published
publisher: ACM
quality_controlled: '1'
related_material:
link:
- description: Open Access available via this link.
relation: other
url: ' https://www.sighpc.org/for-our-community/acm-open-tocs/pasc23-open-toc '
status: public
title: FPGA Acceleration for HPC Supercapacitor Simulations
type: conference
user_id: '3145'
year: '2023'
...
---
_id: '45893'
author:
- first_name: Tim
full_name: Hansmeier, Tim
id: '49992'
last_name: Hansmeier
orcid: 0000-0003-1377-3339
- first_name: Tobias
full_name: Kenter, Tobias
id: '3145'
last_name: Kenter
- first_name: Marius
full_name: Meyer, Marius
id: '40778'
last_name: Meyer
- first_name: Heinrich
full_name: Riebler, Heinrich
id: '8961'
last_name: Riebler
- first_name: Marco
full_name: Platzner, Marco
id: '398'
last_name: Platzner
- first_name: Christian
full_name: Plessl, Christian
id: '16153'
last_name: Plessl
orcid: 0000-0001-5728-9982
citation:
ama: 'Hansmeier T, Kenter T, Meyer M, Riebler H, Platzner M, Plessl C. Compute Centers
I: Heterogeneous Execution Environments. In: Haake C-J, Meyer auf der Heide F,
Platzner M, Wachsmuth H, Wehrheim H, eds. On-The-Fly Computing -- Individualized
IT-Services in Dynamic Markets. Vol 412. Verlagsschriftenreihe des Heinz Nixdorf
Instituts. Heinz Nixdorf Institut, Universität Paderborn; 2023:165-182. doi:10.5281/zenodo.8068642'
apa: 'Hansmeier, T., Kenter, T., Meyer, M., Riebler, H., Platzner, M., & Plessl,
C. (2023). Compute Centers I: Heterogeneous Execution Environments. In C.-J. Haake,
F. Meyer auf der Heide, M. Platzner, H. Wachsmuth, & H. Wehrheim (Eds.), On-The-Fly
Computing -- Individualized IT-services in dynamic markets (Vol. 412, pp.
165–182). Heinz Nixdorf Institut, Universität Paderborn. https://doi.org/10.5281/zenodo.8068642'
bibtex: '@inbook{Hansmeier_Kenter_Meyer_Riebler_Platzner_Plessl_2023, place={Paderborn},
series={Verlagsschriftenreihe des Heinz Nixdorf Instituts}, title={Compute Centers
I: Heterogeneous Execution Environments}, volume={412}, DOI={10.5281/zenodo.8068642},
booktitle={On-The-Fly Computing -- Individualized IT-services in dynamic markets},
publisher={Heinz Nixdorf Institut, Universität Paderborn}, author={Hansmeier,
Tim and Kenter, Tobias and Meyer, Marius and Riebler, Heinrich and Platzner, Marco
and Plessl, Christian}, editor={Haake, Claus-Jochen and Meyer auf der Heide, Friedhelm
and Platzner, Marco and Wachsmuth, Henning and Wehrheim, Heike}, year={2023},
pages={165–182}, collection={Verlagsschriftenreihe des Heinz Nixdorf Instituts}
}'
chicago: 'Hansmeier, Tim, Tobias Kenter, Marius Meyer, Heinrich Riebler, Marco Platzner,
and Christian Plessl. “Compute Centers I: Heterogeneous Execution Environments.”
In On-The-Fly Computing -- Individualized IT-Services in Dynamic Markets,
edited by Claus-Jochen Haake, Friedhelm Meyer auf der Heide, Marco Platzner, Henning
Wachsmuth, and Heike Wehrheim, 412:165–82. Verlagsschriftenreihe Des Heinz Nixdorf
Instituts. Paderborn: Heinz Nixdorf Institut, Universität Paderborn, 2023. https://doi.org/10.5281/zenodo.8068642.'
ieee: 'T. Hansmeier, T. Kenter, M. Meyer, H. Riebler, M. Platzner, and C. Plessl,
“Compute Centers I: Heterogeneous Execution Environments,” in On-The-Fly Computing
-- Individualized IT-services in dynamic markets, vol. 412, C.-J. Haake, F.
Meyer auf der Heide, M. Platzner, H. Wachsmuth, and H. Wehrheim, Eds. Paderborn:
Heinz Nixdorf Institut, Universität Paderborn, 2023, pp. 165–182.'
mla: 'Hansmeier, Tim, et al. “Compute Centers I: Heterogeneous Execution Environments.”
On-The-Fly Computing -- Individualized IT-Services in Dynamic Markets,
edited by Claus-Jochen Haake et al., vol. 412, Heinz Nixdorf Institut, Universität
Paderborn, 2023, pp. 165–82, doi:10.5281/zenodo.8068642.'
short: 'T. Hansmeier, T. Kenter, M. Meyer, H. Riebler, M. Platzner, C. Plessl, in:
C.-J. Haake, F. Meyer auf der Heide, M. Platzner, H. Wachsmuth, H. Wehrheim (Eds.),
On-The-Fly Computing -- Individualized IT-Services in Dynamic Markets, Heinz Nixdorf
Institut, Universität Paderborn, Paderborn, 2023, pp. 165–182.'
date_created: 2023-07-07T08:15:45Z
date_updated: 2024-05-02T10:33:00Z
ddc:
- '004'
department:
- _id: '7'
- _id: '27'
- _id: '518'
- _id: '78'
doi: 10.5281/zenodo.8068642
editor:
- first_name: Claus-Jochen
full_name: Haake, Claus-Jochen
last_name: Haake
- first_name: Friedhelm
full_name: Meyer auf der Heide, Friedhelm
last_name: Meyer auf der Heide
- first_name: Marco
full_name: Platzner, Marco
last_name: Platzner
- first_name: Henning
full_name: Wachsmuth, Henning
last_name: Wachsmuth
- first_name: Heike
full_name: Wehrheim, Heike
last_name: Wehrheim
file:
- access_level: open_access
content_type: application/pdf
creator: florida
date_created: 2023-07-07T08:15:35Z
date_updated: 2023-07-07T11:17:33Z
file_id: '45894'
file_name: C2-Chapter-SFB-Buch-Final.pdf
file_size: 2288788
relation: main_file
file_date_updated: 2023-07-07T11:17:33Z
has_accepted_license: '1'
intvolume: ' 412'
language:
- iso: eng
oa: '1'
page: 165-182
place: Paderborn
project:
- _id: '1'
grant_number: '160364472'
name: 'SFB 901: SFB 901: On-The-Fly Computing - Individualisierte IT-Dienstleistungen
in dynamischen Märkten '
- _id: '4'
name: 'SFB 901 - C: SFB 901 - Project Area C'
- _id: '14'
grant_number: '160364472'
name: 'SFB 901 - C2: SFB 901 - On-The-Fly Compute Centers I: Heterogene Ausführungsumgebungen
(Subproject C2)'
publication: On-The-Fly Computing -- Individualized IT-services in dynamic markets
publisher: Heinz Nixdorf Institut, Universität Paderborn
series_title: Verlagsschriftenreihe des Heinz Nixdorf Instituts
status: public
title: 'Compute Centers I: Heterogeneous Execution Environments'
type: book_chapter
user_id: '398'
volume: 412
year: '2023'
...
---
_id: '38041'
abstract:
- lang: eng
text: "While FPGA accelerator boards and their respective high-level design
tools are maturing, there is still a lack of multi-FPGA applications, libraries,
and not least, benchmarks and reference implementations towards sustained HPC
usage of these devices. As in the early days of GPUs in HPC, for workloads that
can reasonably be decoupled into loosely coupled working sets, multi-accelerator
support can be achieved by using standard communication interfaces like MPI on
the host side. However, for performance and productivity, some applications can
profit from a tighter coupling of the accelerators. FPGAs offer unique opportunities
here when extending the dataflow characteristics to their communication interfaces.\r\n
\ In this work, we extend the HPCC FPGA benchmark suite by multi-FPGA
support and three missing benchmarks that particularly characterize or stress
inter-device communication: b_eff, PTRANS, and LINPACK. With all benchmarks implemented
for current boards with Intel and Xilinx FPGAs, we established a baseline for
multi-FPGA performance. Additionally, for the communication-centric benchmarks,
we explored the potential of direct FPGA-to-FPGA communication with a circuit-switched
inter-FPGA network that is currently only available for one of the boards. The
evaluation with parallel execution on up to 26 FPGA boards makes use of one of
the largest academic FPGA installations."
author:
- first_name: Marius
full_name: Meyer, Marius
id: '40778'
last_name: Meyer
- first_name: Tobias
full_name: Kenter, Tobias
id: '3145'
last_name: Kenter
- first_name: Christian
full_name: Plessl, Christian
id: '16153'
last_name: Plessl
orcid: 0000-0001-5728-9982
citation:
ama: Meyer M, Kenter T, Plessl C. Multi-FPGA Designs and Scaling of HPC Challenge
Benchmarks via MPI and Circuit-Switched Inter-FPGA Networks. ACM Transactions
on Reconfigurable Technology and Systems. Published online 2023. doi:10.1145/3576200
apa: Meyer, M., Kenter, T., & Plessl, C. (2023). Multi-FPGA Designs and Scaling
of HPC Challenge Benchmarks via MPI and Circuit-Switched Inter-FPGA Networks.
ACM Transactions on Reconfigurable Technology and Systems. https://doi.org/10.1145/3576200
bibtex: '@article{Meyer_Kenter_Plessl_2023, title={Multi-FPGA Designs and Scaling
of HPC Challenge Benchmarks via MPI and Circuit-Switched Inter-FPGA Networks},
DOI={10.1145/3576200}, journal={ACM
Transactions on Reconfigurable Technology and Systems}, publisher={Association
for Computing Machinery (ACM)}, author={Meyer, Marius and Kenter, Tobias and Plessl,
Christian}, year={2023} }'
chicago: Meyer, Marius, Tobias Kenter, and Christian Plessl. “Multi-FPGA Designs
and Scaling of HPC Challenge Benchmarks via MPI and Circuit-Switched Inter-FPGA
Networks.” ACM Transactions on Reconfigurable Technology and Systems, 2023.
https://doi.org/10.1145/3576200.
ieee: 'M. Meyer, T. Kenter, and C. Plessl, “Multi-FPGA Designs and Scaling of HPC
Challenge Benchmarks via MPI and Circuit-Switched Inter-FPGA Networks,” ACM
Transactions on Reconfigurable Technology and Systems, 2023, doi: 10.1145/3576200.'
mla: Meyer, Marius, et al. “Multi-FPGA Designs and Scaling of HPC Challenge Benchmarks
via MPI and Circuit-Switched Inter-FPGA Networks.” ACM Transactions on Reconfigurable
Technology and Systems, Association for Computing Machinery (ACM), 2023, doi:10.1145/3576200.
short: M. Meyer, T. Kenter, C. Plessl, ACM Transactions on Reconfigurable Technology
and Systems (2023).
date_created: 2023-01-23T08:40:42Z
date_updated: 2023-07-28T08:02:05Z
department:
- _id: '27'
- _id: '518'
doi: 10.1145/3576200
keyword:
- General Computer Science
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://dl.acm.org/doi/10.1145/3576200
oa: '1'
project:
- _id: '52'
name: 'PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing'
- _id: '4'
name: 'SFB 901 - C: SFB 901 - Project Area C'
- _id: '1'
grant_number: '160364472'
name: 'SFB 901: SFB 901'
- _id: '14'
grant_number: '160364472'
name: 'SFB 901 - C2: SFB 901 - Subproject C2'
publication: ACM Transactions on Reconfigurable Technology and Systems
publication_identifier:
issn:
- 1936-7406
- 1936-7414
publication_status: published
publisher: Association for Computing Machinery (ACM)
quality_controlled: '1'
status: public
title: Multi-FPGA Designs and Scaling of HPC Challenge Benchmarks via MPI and Circuit-Switched
Inter-FPGA Networks
type: journal_article
user_id: '24135'
year: '2023'
...
---
_id: '43228'
abstract:
- lang: eng
text: "The computation of electron repulsion integrals (ERIs) over Gaussian-type
orbitals (GTOs) is a challenging problem in quantum-mechanics-based atomistic
simulations. In practical simulations, several trillions of ERIs may have to be\r\ncomputed
for every time step.\r\nIn this work, we investigate FPGAs as accelerators for
the ERI computation. We use template parameters, here within the Intel oneAPI
tool flow, to create customized designs for 256 different ERI quartet classes,
based on their orbitals. To maximize data reuse, all intermediates are buffered
in FPGA on-chip memory with customized layout. The pre-calculation of intermediates
also helps to overcome data dependencies caused by multi-dimensional recurrence\r\nrelations.
The involved loop structures are partially or even fully unrolled for high throughput
of FPGA kernels. Furthermore, a lossy compression algorithm utilizing arbitrary
bitwidth integers is integrated in the FPGA kernels. To our\r\nbest knowledge,
this is the first work on ERI computation on FPGAs that supports more than just
the single most basic quartet class. Also, the integration of ERI computation
and compression it a novelty that is not even covered by CPU or GPU libraries
so far.\r\nOur evaluation shows that using 16-bit integer for the ERI compression,
the fastest FPGA kernels exceed the performance of 10 GERIS ($10 \\times 10^9$
ERIs per second) on one Intel Stratix 10 GX 2800 FPGA, with maximum absolute errors
around $10^{-7}$ - $10^{-5}$ Hartree. The measured throughput can be accurately
explained by a performance model. The FPGA kernels deployed on 2 FPGAs outperform
similar computations using the widely used libint reference on a two-socket server
with 40 Xeon Gold 6148 CPU cores of the same process technology by factors up
to 6.0x and on a new two-socket server with 128 EPYC 7713 CPU cores by up to 1.9x."
author:
- first_name: Xin
full_name: Wu, Xin
id: '77439'
last_name: Wu
- first_name: Tobias
full_name: Kenter, Tobias
id: '3145'
last_name: Kenter
- first_name: Robert
full_name: Schade, Robert
id: '75963'
last_name: Schade
orcid: 0000-0002-6268-539
- first_name: Thomas
full_name: Kühne, Thomas
id: '49079'
last_name: Kühne
- first_name: Christian
full_name: Plessl, Christian
id: '16153'
last_name: Plessl
orcid: 0000-0001-5728-9982
citation:
ama: 'Wu X, Kenter T, Schade R, Kühne T, Plessl C. Computing and Compressing Electron
Repulsion Integrals on FPGAs. In: 2023 IEEE 31st Annual International Symposium
on Field-Programmable Custom Computing Machines (FCCM). ; 2023:162-173. doi:10.1109/FCCM57271.2023.00026'
apa: Wu, X., Kenter, T., Schade, R., Kühne, T., & Plessl, C. (2023). Computing
and Compressing Electron Repulsion Integrals on FPGAs. 2023 IEEE 31st Annual
International Symposium on Field-Programmable Custom Computing Machines (FCCM),
162–173. https://doi.org/10.1109/FCCM57271.2023.00026
bibtex: '@inproceedings{Wu_Kenter_Schade_Kühne_Plessl_2023, title={Computing and
Compressing Electron Repulsion Integrals on FPGAs}, DOI={10.1109/FCCM57271.2023.00026},
booktitle={2023 IEEE 31st Annual International Symposium on Field-Programmable
Custom Computing Machines (FCCM)}, author={Wu, Xin and Kenter, Tobias and Schade,
Robert and Kühne, Thomas and Plessl, Christian}, year={2023}, pages={162–173}
}'
chicago: Wu, Xin, Tobias Kenter, Robert Schade, Thomas Kühne, and Christian Plessl.
“Computing and Compressing Electron Repulsion Integrals on FPGAs.” In 2023
IEEE 31st Annual International Symposium on Field-Programmable Custom Computing
Machines (FCCM), 162–73, 2023. https://doi.org/10.1109/FCCM57271.2023.00026.
ieee: 'X. Wu, T. Kenter, R. Schade, T. Kühne, and C. Plessl, “Computing and Compressing
Electron Repulsion Integrals on FPGAs,” in 2023 IEEE 31st Annual International
Symposium on Field-Programmable Custom Computing Machines (FCCM), 2023, pp.
162–173, doi: 10.1109/FCCM57271.2023.00026.'
mla: Wu, Xin, et al. “Computing and Compressing Electron Repulsion Integrals on
FPGAs.” 2023 IEEE 31st Annual International Symposium on Field-Programmable
Custom Computing Machines (FCCM), 2023, pp. 162–73, doi:10.1109/FCCM57271.2023.00026.
short: 'X. Wu, T. Kenter, R. Schade, T. Kühne, C. Plessl, in: 2023 IEEE 31st Annual
International Symposium on Field-Programmable Custom Computing Machines (FCCM),
2023, pp. 162–173.'
date_created: 2023-03-30T11:15:40Z
date_updated: 2023-08-02T15:05:42Z
department:
- _id: '27'
- _id: '518'
doi: 10.1109/FCCM57271.2023.00026
external_id:
arxiv:
- '2303.13632'
language:
- iso: eng
main_file_link:
- url: https://ieeexplore.ieee.org/document/10171537
page: 162-173
project:
- _id: '52'
name: 'PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing'
publication: 2023 IEEE 31st Annual International Symposium on Field-Programmable Custom
Computing Machines (FCCM)
quality_controlled: '1'
status: public
title: Computing and Compressing Electron Repulsion Integrals on FPGAs
type: conference
user_id: '75963'
year: '2023'
...
---
_id: '45361'
abstract:
- lang: eng
text: The non-orthogonal local submatrix method applied to electronic structure–based
molecular dynamics simulations is shown to exceed 1.1 EFLOP/s in FP16/FP32-mixed
floating-point arithmetic when using 4400 NVIDIA A100 GPUs of the Perlmutter system.
This is enabled by a modification of the original method that pushes the sustained
fraction of the peak performance to about 80%. Example calculations are performed
for SARS-CoV-2 spike proteins with up to 83 million atoms.
article_number: '109434202311776'
article_type: original
author:
- first_name: Robert
full_name: Schade, Robert
id: '75963'
last_name: Schade
orcid: 0000-0002-6268-539
- first_name: Tobias
full_name: Kenter, Tobias
id: '3145'
last_name: Kenter
- first_name: Hossam
full_name: Elgabarty, Hossam
id: '60250'
last_name: Elgabarty
orcid: 0000-0002-4945-1481
- first_name: Michael
full_name: Lass, Michael
id: '24135'
last_name: Lass
orcid: 0000-0002-5708-7632
- first_name: Thomas
full_name: Kühne, Thomas
id: '49079'
last_name: Kühne
- first_name: Christian
full_name: Plessl, Christian
id: '16153'
last_name: Plessl
orcid: 0000-0001-5728-9982
citation:
ama: Schade R, Kenter T, Elgabarty H, Lass M, Kühne T, Plessl C. Breaking the exascale
barrier for the electronic structure problem in ab-initio molecular dynamics.
The International Journal of High Performance Computing Applications. Published
online 2023. doi:10.1177/10943420231177631
apa: Schade, R., Kenter, T., Elgabarty, H., Lass, M., Kühne, T., & Plessl, C.
(2023). Breaking the exascale barrier for the electronic structure problem in
ab-initio molecular dynamics. The International Journal of High Performance
Computing Applications, Article 109434202311776. https://doi.org/10.1177/10943420231177631
bibtex: '@article{Schade_Kenter_Elgabarty_Lass_Kühne_Plessl_2023, title={Breaking
the exascale barrier for the electronic structure problem in ab-initio molecular
dynamics}, DOI={10.1177/10943420231177631},
number={109434202311776}, journal={The International Journal of High Performance
Computing Applications}, publisher={SAGE Publications}, author={Schade, Robert
and Kenter, Tobias and Elgabarty, Hossam and Lass, Michael and Kühne, Thomas and
Plessl, Christian}, year={2023} }'
chicago: Schade, Robert, Tobias Kenter, Hossam Elgabarty, Michael Lass, Thomas Kühne,
and Christian Plessl. “Breaking the Exascale Barrier for the Electronic Structure
Problem in Ab-Initio Molecular Dynamics.” The International Journal of High
Performance Computing Applications, 2023. https://doi.org/10.1177/10943420231177631.
ieee: 'R. Schade, T. Kenter, H. Elgabarty, M. Lass, T. Kühne, and C. Plessl, “Breaking
the exascale barrier for the electronic structure problem in ab-initio molecular
dynamics,” The International Journal of High Performance Computing Applications,
Art. no. 109434202311776, 2023, doi: 10.1177/10943420231177631.'
mla: Schade, Robert, et al. “Breaking the Exascale Barrier for the Electronic Structure
Problem in Ab-Initio Molecular Dynamics.” The International Journal of High
Performance Computing Applications, 109434202311776, SAGE Publications, 2023,
doi:10.1177/10943420231177631.
short: R. Schade, T. Kenter, H. Elgabarty, M. Lass, T. Kühne, C. Plessl, The International
Journal of High Performance Computing Applications (2023).
date_created: 2023-05-30T09:19:09Z
date_updated: 2023-08-02T15:04:53Z
department:
- _id: '27'
- _id: '518'
doi: 10.1177/10943420231177631
keyword:
- Hardware and Architecture
- Theoretical Computer Science
- Software
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://journals.sagepub.com/doi/10.1177/10943420231177631
oa: '1'
project:
- _id: '52'
name: 'PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing'
publication: The International Journal of High Performance Computing Applications
publication_identifier:
issn:
- 1094-3420
- 1741-2846
publication_status: published
publisher: SAGE Publications
quality_controlled: '1'
status: public
title: Breaking the exascale barrier for the electronic structure problem in ab-initio
molecular dynamics
type: journal_article
user_id: '75963'
year: '2023'
...
---
_id: '46191'
author:
- first_name: Christoph
full_name: Alt, Christoph
id: '100625'
last_name: Alt
- first_name: Tobias
full_name: Kenter, Tobias
id: '3145'
last_name: Kenter
- first_name: Sara
full_name: Faghih-Naini, Sara
last_name: Faghih-Naini
- first_name: Jennifer
full_name: Faj, Jennifer
id: '78722'
last_name: Faj
- first_name: Jan-Oliver
full_name: Opdenhövel, Jan-Oliver
id: '73960'
last_name: Opdenhövel
orcid: 0000-0003-2314-2784
- first_name: Christian
full_name: Plessl, Christian
id: '16153'
last_name: Plessl
orcid: 0000-0001-5728-9982
- first_name: Vadym
full_name: Aizinger, Vadym
last_name: Aizinger
- first_name: Jan
full_name: Hönig, Jan
last_name: Hönig
- first_name: Harald
full_name: Köstler, Harald
last_name: Köstler
citation:
ama: 'Alt C, Kenter T, Faghih-Naini S, et al. Shallow Water DG Simulations on FPGAs:
Design and Comparison of a Novel Code Generation Pipeline. In: Lecture Notes
in Computer Science. Springer Nature Switzerland; 2023. doi:10.1007/978-3-031-32041-5_5'
apa: 'Alt, C., Kenter, T., Faghih-Naini, S., Faj, J., Opdenhövel, J.-O., Plessl,
C., Aizinger, V., Hönig, J., & Köstler, H. (2023). Shallow Water DG Simulations
on FPGAs: Design and Comparison of a Novel Code Generation Pipeline. In Lecture
Notes in Computer Science. Springer Nature Switzerland. https://doi.org/10.1007/978-3-031-32041-5_5'
bibtex: '@inbook{Alt_Kenter_Faghih-Naini_Faj_Opdenhövel_Plessl_Aizinger_Hönig_Köstler_2023,
place={Cham}, title={Shallow Water DG Simulations on FPGAs: Design and Comparison
of a Novel Code Generation Pipeline}, DOI={10.1007/978-3-031-32041-5_5},
booktitle={Lecture Notes in Computer Science}, publisher={Springer Nature Switzerland},
author={Alt, Christoph and Kenter, Tobias and Faghih-Naini, Sara and Faj, Jennifer
and Opdenhövel, Jan-Oliver and Plessl, Christian and Aizinger, Vadym and Hönig,
Jan and Köstler, Harald}, year={2023} }'
chicago: 'Alt, Christoph, Tobias Kenter, Sara Faghih-Naini, Jennifer Faj, Jan-Oliver
Opdenhövel, Christian Plessl, Vadym Aizinger, Jan Hönig, and Harald Köstler. “Shallow
Water DG Simulations on FPGAs: Design and Comparison of a Novel Code Generation
Pipeline.” In Lecture Notes in Computer Science. Cham: Springer Nature
Switzerland, 2023. https://doi.org/10.1007/978-3-031-32041-5_5.'
ieee: 'C. Alt et al., “Shallow Water DG Simulations on FPGAs: Design and Comparison
of a Novel Code Generation Pipeline,” in Lecture Notes in Computer Science,
Cham: Springer Nature Switzerland, 2023.'
mla: 'Alt, Christoph, et al. “Shallow Water DG Simulations on FPGAs: Design and Comparison
of a Novel Code Generation Pipeline.” Lecture Notes in Computer Science,
Springer Nature Switzerland, 2023, doi:10.1007/978-3-031-32041-5_5.'
short: 'C. Alt, T. Kenter, S. Faghih-Naini, J. Faj, J.-O. Opdenhövel, C. Plessl,
V. Aizinger, J. Hönig, H. Köstler, in: Lecture Notes in Computer Science, Springer
Nature Switzerland, Cham, 2023.'
date_created: 2023-07-28T09:53:21Z
date_updated: 2025-11-04T09:32:49Z
department:
- _id: '27'
- _id: '518'
doi: 10.1007/978-3-031-32041-5_5
language:
- iso: eng
place: Cham
project:
- _id: '52'
name: 'PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing'
publication: Lecture Notes in Computer Science
publication_identifier:
isbn:
- '9783031320408'
- '9783031320415'
issn:
- 0302-9743
- 1611-3349
publication_status: published
publisher: Springer Nature Switzerland
quality_controlled: '1'
status: public
title: 'Shallow Water DG Simulations on FPGAs: Design and Comparison of a Novel Code
Generation Pipeline'
type: book_chapter
user_id: '3145'
year: '2023'
...
---
_id: '46190'
author:
- first_name: Jan-Oliver
full_name: Opdenhövel, Jan-Oliver
id: '73960'
last_name: Opdenhövel
orcid: 0000-0003-2314-2784
- first_name: Christian
full_name: Plessl, Christian
id: '16153'
last_name: Plessl
orcid: 0000-0001-5728-9982
- first_name: Tobias
full_name: Kenter, Tobias
id: '3145'
last_name: Kenter
citation:
ama: 'Opdenhövel J-O, Plessl C, Kenter T. Mutation Tree Reconstruction of Tumor
Cells on FPGAs Using a Bit-Level Matrix Representation. In: Proceedings of
the 13th International Symposium on Highly Efficient Accelerators and Reconfigurable
Technologies (HEART). ACM; 2023. doi:10.1145/3597031.3597050'
apa: Opdenhövel, J.-O., Plessl, C., & Kenter, T. (2023). Mutation Tree Reconstruction
of Tumor Cells on FPGAs Using a Bit-Level Matrix Representation. Proceedings
of the 13th International Symposium on Highly Efficient Accelerators and Reconfigurable
Technologies (HEART). https://doi.org/10.1145/3597031.3597050
bibtex: '@inproceedings{Opdenhövel_Plessl_Kenter_2023, title={Mutation Tree Reconstruction
of Tumor Cells on FPGAs Using a Bit-Level Matrix Representation}, DOI={10.1145/3597031.3597050},
booktitle={Proceedings of the 13th International Symposium on Highly Efficient
Accelerators and Reconfigurable Technologies (HEART)}, publisher={ACM}, author={Opdenhövel,
Jan-Oliver and Plessl, Christian and Kenter, Tobias}, year={2023} }'
chicago: Opdenhövel, Jan-Oliver, Christian Plessl, and Tobias Kenter. “Mutation
Tree Reconstruction of Tumor Cells on FPGAs Using a Bit-Level Matrix Representation.”
In Proceedings of the 13th International Symposium on Highly Efficient Accelerators
and Reconfigurable Technologies (HEART). ACM, 2023. https://doi.org/10.1145/3597031.3597050.
ieee: 'J.-O. Opdenhövel, C. Plessl, and T. Kenter, “Mutation Tree Reconstruction
of Tumor Cells on FPGAs Using a Bit-Level Matrix Representation,” 2023, doi: 10.1145/3597031.3597050.'
mla: Opdenhövel, Jan-Oliver, et al. “Mutation Tree Reconstruction of Tumor Cells
on FPGAs Using a Bit-Level Matrix Representation.” Proceedings of the 13th
International Symposium on Highly Efficient Accelerators and Reconfigurable Technologies
(HEART), ACM, 2023, doi:10.1145/3597031.3597050.
short: 'J.-O. Opdenhövel, C. Plessl, T. Kenter, in: Proceedings of the 13th International
Symposium on Highly Efficient Accelerators and Reconfigurable Technologies (HEART),
ACM, 2023.'
date_created: 2023-07-28T09:49:23Z
date_updated: 2025-11-04T09:32:30Z
department:
- _id: '27'
- _id: '518'
doi: 10.1145/3597031.3597050
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://dl.acm.org/doi/pdf/10.1145/3597031.3597050
oa: '1'
project:
- _id: '52'
name: 'PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing'
publication: Proceedings of the 13th International Symposium on Highly Efficient Accelerators
and Reconfigurable Technologies (HEART)
publication_status: published
publisher: ACM
quality_controlled: '1'
status: public
title: Mutation Tree Reconstruction of Tumor Cells on FPGAs Using a Bit-Level Matrix
Representation
type: conference
user_id: '3145'
year: '2023'
...
---
_id: '32414'
author:
- first_name: Michael
full_name: Lass, Michael
id: '24135'
last_name: Lass
orcid: 0000-0002-5708-7632
citation:
ama: Lass M. Bringing Massive Parallelism and Hardware Acceleration to Linear
Scaling Density Functional Theory Through Targeted Approximations. Universität
Paderborn; 2022. doi:10.17619/UNIPB/1-1281
apa: Lass, M. (2022). Bringing Massive Parallelism and Hardware Acceleration
to Linear Scaling Density Functional Theory Through Targeted Approximations.
Universität Paderborn. https://doi.org/10.17619/UNIPB/1-1281
bibtex: '@book{Lass_2022, place={Paderborn}, title={Bringing Massive Parallelism
and Hardware Acceleration to Linear Scaling Density Functional Theory Through
Targeted Approximations}, DOI={10.17619/UNIPB/1-1281},
publisher={Universität Paderborn}, author={Lass, Michael}, year={2022} }'
chicago: 'Lass, Michael. Bringing Massive Parallelism and Hardware Acceleration
to Linear Scaling Density Functional Theory Through Targeted Approximations.
Paderborn: Universität Paderborn, 2022. https://doi.org/10.17619/UNIPB/1-1281.'
ieee: 'M. Lass, Bringing Massive Parallelism and Hardware Acceleration to Linear
Scaling Density Functional Theory Through Targeted Approximations. Paderborn:
Universität Paderborn, 2022.'
mla: Lass, Michael. Bringing Massive Parallelism and Hardware Acceleration to
Linear Scaling Density Functional Theory Through Targeted Approximations.
Universität Paderborn, 2022, doi:10.17619/UNIPB/1-1281.
short: M. Lass, Bringing Massive Parallelism and Hardware Acceleration to Linear
Scaling Density Functional Theory Through Targeted Approximations, Universität
Paderborn, Paderborn, 2022.
date_created: 2022-07-25T18:13:51Z
date_updated: 2022-07-25T18:14:23Z
department:
- _id: '27'
- _id: '518'
doi: 10.17619/UNIPB/1-1281
language:
- iso: eng
place: Paderborn
publisher: Universität Paderborn
status: public
supervisor:
- first_name: Christian
full_name: Plessl, Christian
id: '16153'
last_name: Plessl
orcid: 0000-0001-5728-9982
title: Bringing Massive Parallelism and Hardware Acceleration to Linear Scaling Density
Functional Theory Through Targeted Approximations
type: dissertation
user_id: '24135'
year: '2022'
...
---
_id: '33493'
abstract:
- lang: eng
text: "Electronic structure calculations have been instrumental in providing many\r\nimportant
insights into a range of physical and chemical properties of various\r\nmolecular
and solid-state systems. Their importance to various fields,\r\nincluding materials
science, chemical sciences, computational chemistry and\r\ndevice physics, is
underscored by the large fraction of available public\r\nsupercomputing resources
devoted to these calculations. As we enter the\r\nexascale era, exciting new opportunities
to increase simulation numbers, sizes,\r\nand accuracies present themselves. In
order to realize these promises, the\r\ncommunity of electronic structure software
developers will however first have\r\nto tackle a number of challenges pertaining
to the efficient use of new\r\narchitectures that will rely heavily on massive
parallelism and hardware\r\naccelerators. This roadmap provides a broad overview
of the state-of-the-art in\r\nelectronic structure calculations and of the various
new directions being\r\npursued by the community. It covers 14 electronic structure
codes, presenting\r\ntheir current status, their development priorities over the
next five years,\r\nand their plans towards tackling the challenges and leveraging
the\r\nopportunities presented by the advent of exascale computing."
author:
- first_name: Vikram
full_name: Gavini, Vikram
last_name: Gavini
- first_name: Stefano
full_name: Baroni, Stefano
last_name: Baroni
- first_name: Volker
full_name: Blum, Volker
last_name: Blum
- first_name: David R.
full_name: Bowler, David R.
last_name: Bowler
- first_name: Alexander
full_name: Buccheri, Alexander
last_name: Buccheri
- first_name: James R.
full_name: Chelikowsky, James R.
last_name: Chelikowsky
- first_name: Sambit
full_name: Das, Sambit
last_name: Das
- first_name: William
full_name: Dawson, William
last_name: Dawson
- first_name: Pietro
full_name: Delugas, Pietro
last_name: Delugas
- first_name: Mehmet
full_name: Dogan, Mehmet
last_name: Dogan
- first_name: Claudia
full_name: Draxl, Claudia
last_name: Draxl
- first_name: Giulia
full_name: Galli, Giulia
last_name: Galli
- first_name: Luigi
full_name: Genovese, Luigi
last_name: Genovese
- first_name: Paolo
full_name: Giannozzi, Paolo
last_name: Giannozzi
- first_name: Matteo
full_name: Giantomassi, Matteo
last_name: Giantomassi
- first_name: Xavier
full_name: Gonze, Xavier
last_name: Gonze
- first_name: Marco
full_name: Govoni, Marco
last_name: Govoni
- first_name: Andris
full_name: Gulans, Andris
last_name: Gulans
- first_name: François
full_name: Gygi, François
last_name: Gygi
- first_name: John M.
full_name: Herbert, John M.
last_name: Herbert
- first_name: Sebastian
full_name: Kokott, Sebastian
last_name: Kokott
- first_name: Thomas
full_name: Kühne, Thomas
id: '49079'
last_name: Kühne
- first_name: Kai-Hsin
full_name: Liou, Kai-Hsin
last_name: Liou
- first_name: Tsuyoshi
full_name: Miyazaki, Tsuyoshi
last_name: Miyazaki
- first_name: Phani
full_name: Motamarri, Phani
last_name: Motamarri
- first_name: Ayako
full_name: Nakata, Ayako
last_name: Nakata
- first_name: John E.
full_name: Pask, John E.
last_name: Pask
- first_name: Christian
full_name: Plessl, Christian
id: '16153'
last_name: Plessl
orcid: 0000-0001-5728-9982
- first_name: Laura E.
full_name: Ratcliff, Laura E.
last_name: Ratcliff
- first_name: Ryan M.
full_name: Richard, Ryan M.
last_name: Richard
- first_name: Mariana
full_name: Rossi, Mariana
last_name: Rossi
- first_name: Robert
full_name: Schade, Robert
id: '75963'
last_name: Schade
orcid: 0000-0002-6268-539
- first_name: Matthias
full_name: Scheffler, Matthias
last_name: Scheffler
- first_name: Ole
full_name: Schütt, Ole
last_name: Schütt
- first_name: Phanish
full_name: Suryanarayana, Phanish
last_name: Suryanarayana
- first_name: Marc
full_name: Torrent, Marc
last_name: Torrent
- first_name: Lionel
full_name: Truflandier, Lionel
last_name: Truflandier
- first_name: Theresa L.
full_name: Windus, Theresa L.
last_name: Windus
- first_name: Qimen
full_name: Xu, Qimen
last_name: Xu
- first_name: Victor W. -Z.
full_name: Yu, Victor W. -Z.
last_name: Yu
- first_name: Danny
full_name: Perez, Danny
last_name: Perez
citation:
ama: Gavini V, Baroni S, Blum V, et al. Roadmap on Electronic Structure Codes in
the Exascale Era. arXiv:220912747. Published online 2022.
apa: Gavini, V., Baroni, S., Blum, V., Bowler, D. R., Buccheri, A., Chelikowsky,
J. R., Das, S., Dawson, W., Delugas, P., Dogan, M., Draxl, C., Galli, G., Genovese,
L., Giannozzi, P., Giantomassi, M., Gonze, X., Govoni, M., Gulans, A., Gygi, F.,
… Perez, D. (2022). Roadmap on Electronic Structure Codes in the Exascale Era.
In arXiv:2209.12747.
bibtex: '@article{Gavini_Baroni_Blum_Bowler_Buccheri_Chelikowsky_Das_Dawson_Delugas_Dogan_et
al._2022, title={Roadmap on Electronic Structure Codes in the Exascale Era}, journal={arXiv:2209.12747},
author={Gavini, Vikram and Baroni, Stefano and Blum, Volker and Bowler, David
R. and Buccheri, Alexander and Chelikowsky, James R. and Das, Sambit and Dawson,
William and Delugas, Pietro and Dogan, Mehmet and et al.}, year={2022} }'
chicago: Gavini, Vikram, Stefano Baroni, Volker Blum, David R. Bowler, Alexander
Buccheri, James R. Chelikowsky, Sambit Das, et al. “Roadmap on Electronic Structure
Codes in the Exascale Era.” ArXiv:2209.12747, 2022.
ieee: V. Gavini et al., “Roadmap on Electronic Structure Codes in the Exascale
Era,” arXiv:2209.12747. 2022.
mla: Gavini, Vikram, et al. “Roadmap on Electronic Structure Codes in the Exascale
Era.” ArXiv:2209.12747, 2022.
short: V. Gavini, S. Baroni, V. Blum, D.R. Bowler, A. Buccheri, J.R. Chelikowsky,
S. Das, W. Dawson, P. Delugas, M. Dogan, C. Draxl, G. Galli, L. Genovese, P. Giannozzi,
M. Giantomassi, X. Gonze, M. Govoni, A. Gulans, F. Gygi, J.M. Herbert, S. Kokott,
T. Kühne, K.-H. Liou, T. Miyazaki, P. Motamarri, A. Nakata, J.E. Pask, C. Plessl,
L.E. Ratcliff, R.M. Richard, M. Rossi, R. Schade, M. Scheffler, O. Schütt, P.
Suryanarayana, M. Torrent, L. Truflandier, T.L. Windus, Q. Xu, V.W.-Z. Yu, D.
Perez, ArXiv:2209.12747 (2022).
date_created: 2022-09-28T05:25:10Z
date_updated: 2023-07-28T08:03:41Z
department:
- _id: '27'
- _id: '518'
external_id:
arxiv:
- '2209.12747'
language:
- iso: eng
project:
- _id: '52'
name: 'PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing'
publication: arXiv:2209.12747
status: public
title: Roadmap on Electronic Structure Codes in the Exascale Era
type: preprint
user_id: '24135'
year: '2022'
...
---
_id: '46193'
author:
- first_name: Martin
full_name: Karp, Martin
last_name: Karp
- first_name: Artur
full_name: Podobas, Artur
last_name: Podobas
- first_name: Tobias
full_name: Kenter, Tobias
id: '3145'
last_name: Kenter
- first_name: Niclas
full_name: Jansson, Niclas
last_name: Jansson
- first_name: Christian
full_name: Plessl, Christian
id: '16153'
last_name: Plessl
orcid: 0000-0001-5728-9982
- first_name: Philipp
full_name: Schlatter, Philipp
last_name: Schlatter
- first_name: Stefano
full_name: Markidis, Stefano
last_name: Markidis
citation:
ama: 'Karp M, Podobas A, Kenter T, et al. A High-Fidelity Flow Solver for Unstructured
Meshes on Field-Programmable Gate Arrays: Design, Evaluation, and Future Challenges.
In: International Conference on High Performance Computing in Asia-Pacific
Region. ACM; 2022. doi:10.1145/3492805.3492808'
apa: 'Karp, M., Podobas, A., Kenter, T., Jansson, N., Plessl, C., Schlatter, P.,
& Markidis, S. (2022). A High-Fidelity Flow Solver for Unstructured Meshes
on Field-Programmable Gate Arrays: Design, Evaluation, and Future Challenges.
International Conference on High Performance Computing in Asia-Pacific Region.
https://doi.org/10.1145/3492805.3492808'
bibtex: '@inproceedings{Karp_Podobas_Kenter_Jansson_Plessl_Schlatter_Markidis_2022,
title={A High-Fidelity Flow Solver for Unstructured Meshes on Field-Programmable
Gate Arrays: Design, Evaluation, and Future Challenges}, DOI={10.1145/3492805.3492808},
booktitle={International Conference on High Performance Computing in Asia-Pacific
Region}, publisher={ACM}, author={Karp, Martin and Podobas, Artur and Kenter,
Tobias and Jansson, Niclas and Plessl, Christian and Schlatter, Philipp and Markidis,
Stefano}, year={2022} }'
chicago: 'Karp, Martin, Artur Podobas, Tobias Kenter, Niclas Jansson, Christian
Plessl, Philipp Schlatter, and Stefano Markidis. “A High-Fidelity Flow Solver
for Unstructured Meshes on Field-Programmable Gate Arrays: Design, Evaluation,
and Future Challenges.” In International Conference on High Performance Computing
in Asia-Pacific Region. ACM, 2022. https://doi.org/10.1145/3492805.3492808.'
ieee: 'M. Karp et al., “A High-Fidelity Flow Solver for Unstructured Meshes
on Field-Programmable Gate Arrays: Design, Evaluation, and Future Challenges,”
2022, doi: 10.1145/3492805.3492808.'
mla: 'Karp, Martin, et al. “A High-Fidelity Flow Solver for Unstructured Meshes
on Field-Programmable Gate Arrays: Design, Evaluation, and Future Challenges.”
International Conference on High Performance Computing in Asia-Pacific Region,
ACM, 2022, doi:10.1145/3492805.3492808.'
short: 'M. Karp, A. Podobas, T. Kenter, N. Jansson, C. Plessl, P. Schlatter, S.
Markidis, in: International Conference on High Performance Computing in Asia-Pacific
Region, ACM, 2022.'
date_created: 2023-07-28T11:51:55Z
date_updated: 2023-07-28T11:53:15Z
department:
- _id: '27'
- _id: '518'
doi: 10.1145/3492805.3492808
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://dl.acm.org/doi/pdf/10.1145/3492805.3492808
oa: '1'
project:
- _id: '52'
name: 'PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing'
publication: International Conference on High Performance Computing in Asia-Pacific
Region
publication_status: published
publisher: ACM
quality_controlled: '1'
status: public
title: 'A High-Fidelity Flow Solver for Unstructured Meshes on Field-Programmable
Gate Arrays: Design, Evaluation, and Future Challenges'
type: conference
user_id: '3145'
year: '2022'
...
---
_id: '32404'
abstract:
- lang: eng
text: "The CP2K program package, which can be considered as the swiss army knife
of\r\natomistic simulations, is presented with a special emphasis on ab-initio\r\nmolecular
dynamics using the second-generation Car-Parrinello method. After\r\noutlining
current and near-term development efforts with regards to massively\r\nparallel
low-scaling post-Hartree-Fock and eigenvalue solvers, novel approaches\r\non how
we plan to take full advantage of future low-precision hardware\r\narchitectures
are introduced. Our focus here is on combining our submatrix\r\nmethod with the
approximate computing paradigm to address the immanent exascale\r\nera."
author:
- first_name: Thomas
full_name: Kühne, Thomas
id: '49079'
last_name: Kühne
- first_name: Christian
full_name: Plessl, Christian
id: '16153'
last_name: Plessl
orcid: 0000-0001-5728-9982
- first_name: Robert
full_name: Schade, Robert
id: '75963'
last_name: Schade
orcid: 0000-0002-6268-539
- first_name: Ole
full_name: Schütt, Ole
last_name: Schütt
citation:
ama: Kühne T, Plessl C, Schade R, Schütt O. CP2K on the road to exascale. arXiv:220514741.
Published online 2022.
apa: Kühne, T., Plessl, C., Schade, R., & Schütt, O. (2022). CP2K on the road
to exascale. In arXiv:2205.14741.
bibtex: '@article{Kühne_Plessl_Schade_Schütt_2022, title={CP2K on the road to exascale},
journal={arXiv:2205.14741}, author={Kühne, Thomas and Plessl, Christian and Schade,
Robert and Schütt, Ole}, year={2022} }'
chicago: Kühne, Thomas, Christian Plessl, Robert Schade, and Ole Schütt. “CP2K on
the Road to Exascale.” ArXiv:2205.14741, 2022.
ieee: T. Kühne, C. Plessl, R. Schade, and O. Schütt, “CP2K on the road to exascale,”
arXiv:2205.14741. 2022.
mla: Kühne, Thomas, et al. “CP2K on the Road to Exascale.” ArXiv:2205.14741,
2022.
short: T. Kühne, C. Plessl, R. Schade, O. Schütt, ArXiv:2205.14741 (2022).
date_created: 2022-07-22T08:14:08Z
date_updated: 2023-08-02T14:55:35Z
department:
- _id: '27'
- _id: '518'
- _id: '304'
external_id:
arxiv:
- '2205.14741'
language:
- iso: eng
main_file_link:
- url: https://arxiv.org/abs/2205.14741
project:
- _id: '52'
name: 'PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing'
publication: arXiv:2205.14741
status: public
title: CP2K on the road to exascale
type: preprint
user_id: '75963'
year: '2022'
...
---
_id: '33226'
abstract:
- lang: eng
text: A parallel hybrid quantum-classical algorithm for the solution of the quantum-chemical
ground-state energy problem on gate-based quantum computers is presented. This
approach is based on the reduced density-matrix functional theory (RDMFT) formulation
of the electronic structure problem. For that purpose, the density-matrix functional
of the full system is decomposed into an indirectly coupled sum of density-matrix
functionals for all its subsystems using the adaptive cluster approximation to
RDMFT. The approximations involved in the decomposition and the adaptive cluster
approximation itself can be systematically converged to the exact result. The
solutions for the density-matrix functionals of the effective subsystems involves
a constrained minimization over many-particle states that are approximated by
parametrized trial states on the quantum computer similarly to the variational
quantum eigensolver. The independence of the density-matrix functionals of the
effective subsystems introduces a new level of parallelization and allows for
the computational treatment of much larger molecules on a quantum computer with
a given qubit count. In addition, for the proposed algorithm techniques are presented
to reduce the qubit count, the number of quantum programs, as well as its depth.
The evaluation of a density-matrix functional as the essential part of our approach
is demonstrated for Hubbard-like systems on IBM quantum computers based on superconducting
transmon qubits.
article_type: original
author:
- first_name: Robert
full_name: Schade, Robert
id: '75963'
last_name: Schade
orcid: 0000-0002-6268-539
- first_name: Carsten
full_name: Bauer, Carsten
id: '90082'
last_name: Bauer
- first_name: Konstantin
full_name: Tamoev, Konstantin
id: '50177'
last_name: Tamoev
- first_name: Lukas
full_name: Mazur, Lukas
id: '90492'
last_name: Mazur
orcid: ' 0000-0001-6304-7082'
- first_name: Christian
full_name: Plessl, Christian
id: '16153'
last_name: Plessl
orcid: 0000-0001-5728-9982
- first_name: Thomas
full_name: Kühne, Thomas
id: '49079'
last_name: Kühne
citation:
ama: Schade R, Bauer C, Tamoev K, Mazur L, Plessl C, Kühne T. Parallel quantum chemistry
on noisy intermediate-scale quantum computers. Phys Rev Research. 2022;4:033160.
doi:10.1103/PhysRevResearch.4.033160
apa: Schade, R., Bauer, C., Tamoev, K., Mazur, L., Plessl, C., & Kühne, T. (2022).
Parallel quantum chemistry on noisy intermediate-scale quantum computers. Phys.
Rev. Research, 4, 033160. https://doi.org/10.1103/PhysRevResearch.4.033160
bibtex: '@article{Schade_Bauer_Tamoev_Mazur_Plessl_Kühne_2022, title={Parallel quantum
chemistry on noisy intermediate-scale quantum computers}, volume={4}, DOI={10.1103/PhysRevResearch.4.033160},
journal={Phys. Rev. Research}, publisher={American Physical Society}, author={Schade,
Robert and Bauer, Carsten and Tamoev, Konstantin and Mazur, Lukas and Plessl,
Christian and Kühne, Thomas}, year={2022}, pages={033160} }'
chicago: 'Schade, Robert, Carsten Bauer, Konstantin Tamoev, Lukas Mazur, Christian
Plessl, and Thomas Kühne. “Parallel Quantum Chemistry on Noisy Intermediate-Scale
Quantum Computers.” Phys. Rev. Research 4 (2022): 033160. https://doi.org/10.1103/PhysRevResearch.4.033160.'
ieee: 'R. Schade, C. Bauer, K. Tamoev, L. Mazur, C. Plessl, and T. Kühne, “Parallel
quantum chemistry on noisy intermediate-scale quantum computers,” Phys. Rev.
Research, vol. 4, p. 033160, 2022, doi: 10.1103/PhysRevResearch.4.033160.'
mla: Schade, Robert, et al. “Parallel Quantum Chemistry on Noisy Intermediate-Scale
Quantum Computers.” Phys. Rev. Research, vol. 4, American Physical Society,
2022, p. 033160, doi:10.1103/PhysRevResearch.4.033160.
short: R. Schade, C. Bauer, K. Tamoev, L. Mazur, C. Plessl, T. Kühne, Phys. Rev.
Research 4 (2022) 033160.
date_created: 2022-08-29T14:07:01Z
date_updated: 2023-08-02T15:04:22Z
department:
- _id: '27'
- _id: '518'
doi: 10.1103/PhysRevResearch.4.033160
intvolume: ' 4'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://journals.aps.org/prresearch/abstract/10.1103/PhysRevResearch.4.033160
oa: '1'
page: '033160'
project:
- _id: '52'
name: 'PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing'
publication: Phys. Rev. Research
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
status: public
title: Parallel quantum chemistry on noisy intermediate-scale quantum computers
type: journal_article
user_id: '75963'
volume: 4
year: '2022'
...
---
_id: '33684'
article_number: '102920'
author:
- first_name: Robert
full_name: Schade, Robert
id: '75963'
last_name: Schade
orcid: 0000-0002-6268-539
- first_name: Tobias
full_name: Kenter, Tobias
id: '3145'
last_name: Kenter
- first_name: Hossam
full_name: Elgabarty, Hossam
id: '60250'
last_name: Elgabarty
orcid: 0000-0002-4945-1481
- first_name: Michael
full_name: Lass, Michael
id: '24135'
last_name: Lass
orcid: 0000-0002-5708-7632
- first_name: Ole
full_name: Schütt, Ole
last_name: Schütt
- first_name: Alfio
full_name: Lazzaro, Alfio
last_name: Lazzaro
- first_name: Hans
full_name: Pabst, Hans
last_name: Pabst
- first_name: Stephan
full_name: Mohr, Stephan
last_name: Mohr
- first_name: Jürg
full_name: Hutter, Jürg
last_name: Hutter
- first_name: Thomas
full_name: Kühne, Thomas
id: '49079'
last_name: Kühne
- first_name: Christian
full_name: Plessl, Christian
id: '16153'
last_name: Plessl
orcid: 0000-0001-5728-9982
citation:
ama: Schade R, Kenter T, Elgabarty H, et al. Towards electronic structure-based
ab-initio molecular dynamics simulations with hundreds of millions of atoms. Parallel
Computing. 2022;111. doi:10.1016/j.parco.2022.102920
apa: Schade, R., Kenter, T., Elgabarty, H., Lass, M., Schütt, O., Lazzaro, A., Pabst,
H., Mohr, S., Hutter, J., Kühne, T., & Plessl, C. (2022). Towards electronic
structure-based ab-initio molecular dynamics simulations with hundreds of millions
of atoms. Parallel Computing, 111, Article 102920. https://doi.org/10.1016/j.parco.2022.102920
bibtex: '@article{Schade_Kenter_Elgabarty_Lass_Schütt_Lazzaro_Pabst_Mohr_Hutter_Kühne_et
al._2022, title={Towards electronic structure-based ab-initio molecular dynamics
simulations with hundreds of millions of atoms}, volume={111}, DOI={10.1016/j.parco.2022.102920},
number={102920}, journal={Parallel Computing}, publisher={Elsevier BV}, author={Schade,
Robert and Kenter, Tobias and Elgabarty, Hossam and Lass, Michael and Schütt,
Ole and Lazzaro, Alfio and Pabst, Hans and Mohr, Stephan and Hutter, Jürg and
Kühne, Thomas and et al.}, year={2022} }'
chicago: Schade, Robert, Tobias Kenter, Hossam Elgabarty, Michael Lass, Ole Schütt,
Alfio Lazzaro, Hans Pabst, et al. “Towards Electronic Structure-Based Ab-Initio
Molecular Dynamics Simulations with Hundreds of Millions of Atoms.” Parallel
Computing 111 (2022). https://doi.org/10.1016/j.parco.2022.102920.
ieee: 'R. Schade et al., “Towards electronic structure-based ab-initio molecular
dynamics simulations with hundreds of millions of atoms,” Parallel Computing,
vol. 111, Art. no. 102920, 2022, doi: 10.1016/j.parco.2022.102920.'
mla: Schade, Robert, et al. “Towards Electronic Structure-Based Ab-Initio Molecular
Dynamics Simulations with Hundreds of Millions of Atoms.” Parallel Computing,
vol. 111, 102920, Elsevier BV, 2022, doi:10.1016/j.parco.2022.102920.
short: R. Schade, T. Kenter, H. Elgabarty, M. Lass, O. Schütt, A. Lazzaro, H. Pabst,
S. Mohr, J. Hutter, T. Kühne, C. Plessl, Parallel Computing 111 (2022).
date_created: 2022-10-11T08:17:02Z
date_updated: 2023-08-02T15:03:55Z
department:
- _id: '613'
- _id: '27'
- _id: '518'
doi: 10.1016/j.parco.2022.102920
intvolume: ' 111'
keyword:
- Artificial Intelligence
- Computer Graphics and Computer-Aided Design
- Computer Networks and Communications
- Hardware and Architecture
- Theoretical Computer Science
- Software
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.sciencedirect.com/science/article/pii/S0167819122000242
oa: '1'
project:
- _id: '52'
name: 'PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing'
publication: Parallel Computing
publication_identifier:
issn:
- 0167-8191
publication_status: published
publisher: Elsevier BV
quality_controlled: '1'
status: public
title: Towards electronic structure-based ab-initio molecular dynamics simulations
with hundreds of millions of atoms
type: journal_article
user_id: '75963'
volume: 111
year: '2022'
...
---
_id: '27364'
author:
- first_name: Marius
full_name: Meyer, Marius
id: '40778'
last_name: Meyer
- first_name: Tobias
full_name: Kenter, Tobias
id: '3145'
last_name: Kenter
- first_name: Christian
full_name: Plessl, Christian
id: '16153'
last_name: Plessl
orcid: 0000-0001-5728-9982
citation:
ama: Meyer M, Kenter T, Plessl C. In-depth FPGA Accelerator Performance Evaluation
with Single Node Benchmarks from the HPC Challenge Benchmark Suite for Intel and
Xilinx FPGAs using OpenCL. Journal of Parallel and Distributed Computing.
Published online 2022. doi:10.1016/j.jpdc.2021.10.007
apa: Meyer, M., Kenter, T., & Plessl, C. (2022). In-depth FPGA Accelerator Performance
Evaluation with Single Node Benchmarks from the HPC Challenge Benchmark Suite
for Intel and Xilinx FPGAs using OpenCL. Journal of Parallel and Distributed
Computing. https://doi.org/10.1016/j.jpdc.2021.10.007
bibtex: '@article{Meyer_Kenter_Plessl_2022, title={In-depth FPGA Accelerator Performance
Evaluation with Single Node Benchmarks from the HPC Challenge Benchmark Suite
for Intel and Xilinx FPGAs using OpenCL}, DOI={10.1016/j.jpdc.2021.10.007},
journal={Journal of Parallel and Distributed Computing}, author={Meyer, Marius
and Kenter, Tobias and Plessl, Christian}, year={2022} }'
chicago: Meyer, Marius, Tobias Kenter, and Christian Plessl. “In-Depth FPGA Accelerator
Performance Evaluation with Single Node Benchmarks from the HPC Challenge Benchmark
Suite for Intel and Xilinx FPGAs Using OpenCL.” Journal of Parallel and Distributed
Computing, 2022. https://doi.org/10.1016/j.jpdc.2021.10.007.
ieee: 'M. Meyer, T. Kenter, and C. Plessl, “In-depth FPGA Accelerator Performance
Evaluation with Single Node Benchmarks from the HPC Challenge Benchmark Suite
for Intel and Xilinx FPGAs using OpenCL,” Journal of Parallel and Distributed
Computing, 2022, doi: 10.1016/j.jpdc.2021.10.007.'
mla: Meyer, Marius, et al. “In-Depth FPGA Accelerator Performance Evaluation with
Single Node Benchmarks from the HPC Challenge Benchmark Suite for Intel and Xilinx
FPGAs Using OpenCL.” Journal of Parallel and Distributed Computing, 2022,
doi:10.1016/j.jpdc.2021.10.007.
short: M. Meyer, T. Kenter, C. Plessl, Journal of Parallel and Distributed Computing
(2022).
date_created: 2021-11-10T14:36:27Z
date_updated: 2023-09-26T10:26:56Z
department:
- _id: '27'
- _id: '518'
doi: 10.1016/j.jpdc.2021.10.007
language:
- iso: eng
project:
- _id: '52'
name: Computing Resources Provided by the Paderborn Center for Parallel Computing
publication: Journal of Parallel and Distributed Computing
publication_identifier:
issn:
- 0743-7315
publication_status: published
quality_controlled: '1'
status: public
title: In-depth FPGA Accelerator Performance Evaluation with Single Node Benchmarks
from the HPC Challenge Benchmark Suite for Intel and Xilinx FPGAs using OpenCL
type: journal_article
user_id: '15278'
year: '2022'
...
---
_id: '28099'
abstract:
- lang: eng
text: N-body methods are one of the essential algorithmic building blocks of high-performance
and parallel computing. Previous research has shown promising performance for
implementing n-body simulations with pairwise force calculations on FPGAs. However,
to avoid challenges with accumulation and memory access patterns, the presented
designs calculate each pair of forces twice, along with both force sums of the
involved particles. Also, they require large problem instances with hundreds of
thousands of particles to reach their respective peak performance, limiting the
applicability for strong scaling scenarios. This work addresses both issues by
presenting a novel FPGA design that uses each calculated force twice and overlaps
data transfers and computations in a way that allows to reach peak performance
even for small problem instances, outperforming previous single precision results
even in double precision, and scaling linearly over multiple interconnected FPGAs.
For a comparison across architectures, we provide an equally optimized CPU reference,
which for large problems actually achieves higher peak performance per device,
however, given the strong scaling advantages of the FPGA design, in parallel setups
with few thousand particles per device, the FPGA platform achieves highest performance
and power efficiency.
article_type: original
author:
- first_name: Johannes
full_name: Menzel, Johannes
last_name: Menzel
- first_name: Christian
full_name: Plessl, Christian
id: '16153'
last_name: Plessl
orcid: 0000-0001-5728-9982
- first_name: Tobias
full_name: Kenter, Tobias
id: '3145'
last_name: Kenter
citation:
ama: Menzel J, Plessl C, Kenter T. The Strong Scaling Advantage of FPGAs in HPC
for N-body Simulations. ACM Transactions on Reconfigurable Technology and Systems.
2021;15(1):1-30. doi:10.1145/3491235
apa: Menzel, J., Plessl, C., & Kenter, T. (2021). The Strong Scaling Advantage
of FPGAs in HPC for N-body Simulations. ACM Transactions on Reconfigurable
Technology and Systems, 15(1), 1–30. https://doi.org/10.1145/3491235
bibtex: '@article{Menzel_Plessl_Kenter_2021, title={The Strong Scaling Advantage
of FPGAs in HPC for N-body Simulations}, volume={15}, DOI={10.1145/3491235},
number={1}, journal={ACM Transactions on Reconfigurable Technology and Systems},
author={Menzel, Johannes and Plessl, Christian and Kenter, Tobias}, year={2021},
pages={1–30} }'
chicago: 'Menzel, Johannes, Christian Plessl, and Tobias Kenter. “The Strong Scaling
Advantage of FPGAs in HPC for N-Body Simulations.” ACM Transactions on Reconfigurable
Technology and Systems 15, no. 1 (2021): 1–30. https://doi.org/10.1145/3491235.'
ieee: 'J. Menzel, C. Plessl, and T. Kenter, “The Strong Scaling Advantage of FPGAs
in HPC for N-body Simulations,” ACM Transactions on Reconfigurable Technology
and Systems, vol. 15, no. 1, pp. 1–30, 2021, doi: 10.1145/3491235.'
mla: Menzel, Johannes, et al. “The Strong Scaling Advantage of FPGAs in HPC for
N-Body Simulations.” ACM Transactions on Reconfigurable Technology and Systems,
vol. 15, no. 1, 2021, pp. 1–30, doi:10.1145/3491235.
short: J. Menzel, C. Plessl, T. Kenter, ACM Transactions on Reconfigurable Technology
and Systems 15 (2021) 1–30.
date_created: 2021-11-30T10:00:31Z
date_updated: 2022-01-06T06:57:51Z
department:
- _id: '27'
- _id: '518'
doi: 10.1145/3491235
intvolume: ' 15'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://dl.acm.org/doi/10.1145/3491235
oa: '1'
page: 1-30
publication: ACM Transactions on Reconfigurable Technology and Systems
publication_identifier:
issn:
- 1936-7406
- 1936-7414
publication_status: published
quality_controlled: '1'
status: public
title: The Strong Scaling Advantage of FPGAs in HPC for N-body Simulations
type: journal_article
user_id: '3145'
volume: 15
year: '2021'
...
---
_id: '29937'
author:
- first_name: Martin
full_name: Karp, Martin
last_name: Karp
- first_name: Artur
full_name: Podobas, Artur
last_name: Podobas
- first_name: Niclas
full_name: Jansson, Niclas
last_name: Jansson
- first_name: Tobias
full_name: Kenter, Tobias
id: '3145'
last_name: Kenter
- first_name: Christian
full_name: Plessl, Christian
id: '16153'
last_name: Plessl
orcid: 0000-0001-5728-9982
- first_name: Philipp
full_name: Schlatter, Philipp
last_name: Schlatter
- first_name: Stefano
full_name: Markidis, Stefano
last_name: Markidis
citation:
ama: 'Karp M, Podobas A, Jansson N, et al. High-Performance Spectral Element Methods
on Field-Programmable Gate Arrays : Implementation, Evaluation, and Future Projection.
In: 2021 IEEE International Parallel and Distributed Processing Symposium (IPDPS).
IEEE; 2021. doi:10.1109/ipdps49936.2021.00116'
apa: 'Karp, M., Podobas, A., Jansson, N., Kenter, T., Plessl, C., Schlatter, P.,
& Markidis, S. (2021). High-Performance Spectral Element Methods on Field-Programmable
Gate Arrays : Implementation, Evaluation, and Future Projection. 2021 IEEE
International Parallel and Distributed Processing Symposium (IPDPS). https://doi.org/10.1109/ipdps49936.2021.00116'
bibtex: '@inproceedings{Karp_Podobas_Jansson_Kenter_Plessl_Schlatter_Markidis_2021,
title={High-Performance Spectral Element Methods on Field-Programmable Gate Arrays :
Implementation, Evaluation, and Future Projection}, DOI={10.1109/ipdps49936.2021.00116},
booktitle={2021 IEEE International Parallel and Distributed Processing Symposium
(IPDPS)}, publisher={IEEE}, author={Karp, Martin and Podobas, Artur and Jansson,
Niclas and Kenter, Tobias and Plessl, Christian and Schlatter, Philipp and Markidis,
Stefano}, year={2021} }'
chicago: 'Karp, Martin, Artur Podobas, Niclas Jansson, Tobias Kenter, Christian
Plessl, Philipp Schlatter, and Stefano Markidis. “High-Performance Spectral Element
Methods on Field-Programmable Gate Arrays : Implementation, Evaluation, and Future
Projection.” In 2021 IEEE International Parallel and Distributed Processing
Symposium (IPDPS). IEEE, 2021. https://doi.org/10.1109/ipdps49936.2021.00116.'
ieee: 'M. Karp et al., “High-Performance Spectral Element Methods on Field-Programmable
Gate Arrays : Implementation, Evaluation, and Future Projection,” 2021, doi: 10.1109/ipdps49936.2021.00116.'
mla: 'Karp, Martin, et al. “High-Performance Spectral Element Methods on Field-Programmable
Gate Arrays : Implementation, Evaluation, and Future Projection.” 2021 IEEE
International Parallel and Distributed Processing Symposium (IPDPS), IEEE,
2021, doi:10.1109/ipdps49936.2021.00116.'
short: 'M. Karp, A. Podobas, N. Jansson, T. Kenter, C. Plessl, P. Schlatter, S.
Markidis, in: 2021 IEEE International Parallel and Distributed Processing Symposium
(IPDPS), IEEE, 2021.'
date_created: 2022-02-21T14:26:37Z
date_updated: 2024-01-22T09:59:13Z
department:
- _id: '27'
- _id: '518'
doi: 10.1109/ipdps49936.2021.00116
language:
- iso: eng
project:
- _id: '52'
name: 'PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing'
publication: 2021 IEEE International Parallel and Distributed Processing Symposium
(IPDPS)
publication_status: published
publisher: IEEE
quality_controlled: '1'
status: public
title: 'High-Performance Spectral Element Methods on Field-Programmable Gate Arrays
: Implementation, Evaluation, and Future Projection'
type: conference
user_id: '3145'
year: '2021'
...
---
_id: '46194'
author:
- first_name: Tobias
full_name: Kenter, Tobias
id: '3145'
last_name: Kenter
- first_name: Adesh
full_name: Shambhu, Adesh
last_name: Shambhu
- first_name: Sara
full_name: Faghih-Naini, Sara
last_name: Faghih-Naini
- first_name: Vadym
full_name: Aizinger, Vadym
last_name: Aizinger
citation:
ama: 'Kenter T, Shambhu A, Faghih-Naini S, Aizinger V. Algorithm-hardware co-design
of a discontinuous Galerkin shallow-water model for a dataflow architecture on
FPGA. In: Proceedings of the Platform for Advanced Scientific Computing Conference
(PASC). ACM; 2021. doi:10.1145/3468267.3470617'
apa: Kenter, T., Shambhu, A., Faghih-Naini, S., & Aizinger, V. (2021). Algorithm-hardware
co-design of a discontinuous Galerkin shallow-water model for a dataflow architecture
on FPGA. Proceedings of the Platform for Advanced Scientific Computing Conference
(PASC). https://doi.org/10.1145/3468267.3470617
bibtex: '@inproceedings{Kenter_Shambhu_Faghih-Naini_Aizinger_2021, title={Algorithm-hardware
co-design of a discontinuous Galerkin shallow-water model for a dataflow architecture
on FPGA}, DOI={10.1145/3468267.3470617},
booktitle={Proceedings of the Platform for Advanced Scientific Computing Conference
(PASC)}, publisher={ACM}, author={Kenter, Tobias and Shambhu, Adesh and Faghih-Naini,
Sara and Aizinger, Vadym}, year={2021} }'
chicago: Kenter, Tobias, Adesh Shambhu, Sara Faghih-Naini, and Vadym Aizinger. “Algorithm-Hardware
Co-Design of a Discontinuous Galerkin Shallow-Water Model for a Dataflow Architecture
on FPGA.” In Proceedings of the Platform for Advanced Scientific Computing
Conference (PASC). ACM, 2021. https://doi.org/10.1145/3468267.3470617.
ieee: 'T. Kenter, A. Shambhu, S. Faghih-Naini, and V. Aizinger, “Algorithm-hardware
co-design of a discontinuous Galerkin shallow-water model for a dataflow architecture
on FPGA,” 2021, doi: 10.1145/3468267.3470617.'
mla: Kenter, Tobias, et al. “Algorithm-Hardware Co-Design of a Discontinuous Galerkin
Shallow-Water Model for a Dataflow Architecture on FPGA.” Proceedings of the
Platform for Advanced Scientific Computing Conference (PASC), ACM, 2021, doi:10.1145/3468267.3470617.
short: 'T. Kenter, A. Shambhu, S. Faghih-Naini, V. Aizinger, in: Proceedings of
the Platform for Advanced Scientific Computing Conference (PASC), ACM, 2021.'
date_created: 2023-07-28T11:58:14Z
date_updated: 2024-04-17T08:12:21Z
department:
- _id: '27'
- _id: '518'
doi: 10.1145/3468267.3470617
language:
- iso: eng
main_file_link:
- url: https://dl.acm.org/doi/pdf/10.1145/3468267.3470617
project:
- _id: '52'
name: 'PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing'
publication: Proceedings of the Platform for Advanced Scientific Computing Conference
(PASC)
publication_status: published
publisher: ACM
quality_controlled: '1'
related_material:
link:
- description: Open Access available via this link.
relation: other
url: ' https://www.sighpc.org/for-our-community/acm-open-tocs/pasc21-open-toc '
status: public
title: Algorithm-hardware co-design of a discontinuous Galerkin shallow-water model
for a dataflow architecture on FPGA
type: conference
user_id: '3145'
year: '2021'
...
---
_id: '46195'
author:
- first_name: Martin
full_name: Karp, Martin
last_name: Karp
- first_name: Artur
full_name: Podobas, Artur
last_name: Podobas
- first_name: Niclas
full_name: Jansson, Niclas
last_name: Jansson
- first_name: Tobias
full_name: Kenter, Tobias
id: '3145'
last_name: Kenter
- first_name: Christian
full_name: Plessl, Christian
id: '16153'
last_name: Plessl
orcid: 0000-0001-5728-9982
- first_name: Philipp
full_name: Schlatter, Philipp
last_name: Schlatter
- first_name: Stefano
full_name: Markidis, Stefano
last_name: Markidis
citation:
ama: 'Karp M, Podobas A, Jansson N, et al. High-Performance Spectral Element Methods
on Field-Programmable Gate Arrays : Implementation, Evaluation, and Future Projection.
In: 2021 IEEE International Parallel and Distributed Processing Symposium (IPDPS).
IEEE; 2021. doi:10.1109/ipdps49936.2021.00116'
apa: 'Karp, M., Podobas, A., Jansson, N., Kenter, T., Plessl, C., Schlatter, P.,
& Markidis, S. (2021). High-Performance Spectral Element Methods on Field-Programmable
Gate Arrays : Implementation, Evaluation, and Future Projection. 2021 IEEE
International Parallel and Distributed Processing Symposium (IPDPS). https://doi.org/10.1109/ipdps49936.2021.00116'
bibtex: '@inproceedings{Karp_Podobas_Jansson_Kenter_Plessl_Schlatter_Markidis_2021,
title={High-Performance Spectral Element Methods on Field-Programmable Gate Arrays :
Implementation, Evaluation, and Future Projection}, DOI={10.1109/ipdps49936.2021.00116},
booktitle={2021 IEEE International Parallel and Distributed Processing Symposium
(IPDPS)}, publisher={IEEE}, author={Karp, Martin and Podobas, Artur and Jansson,
Niclas and Kenter, Tobias and Plessl, Christian and Schlatter, Philipp and Markidis,
Stefano}, year={2021} }'
chicago: 'Karp, Martin, Artur Podobas, Niclas Jansson, Tobias Kenter, Christian
Plessl, Philipp Schlatter, and Stefano Markidis. “High-Performance Spectral Element
Methods on Field-Programmable Gate Arrays : Implementation, Evaluation, and Future
Projection.” In 2021 IEEE International Parallel and Distributed Processing
Symposium (IPDPS). IEEE, 2021. https://doi.org/10.1109/ipdps49936.2021.00116.'
ieee: 'M. Karp et al., “High-Performance Spectral Element Methods on Field-Programmable
Gate Arrays : Implementation, Evaluation, and Future Projection,” 2021, doi: 10.1109/ipdps49936.2021.00116.'
mla: 'Karp, Martin, et al. “High-Performance Spectral Element Methods on Field-Programmable
Gate Arrays : Implementation, Evaluation, and Future Projection.” 2021 IEEE
International Parallel and Distributed Processing Symposium (IPDPS), IEEE,
2021, doi:10.1109/ipdps49936.2021.00116.'
short: 'M. Karp, A. Podobas, N. Jansson, T. Kenter, C. Plessl, P. Schlatter, S.
Markidis, in: 2021 IEEE International Parallel and Distributed Processing Symposium
(IPDPS), IEEE, 2021.'
date_created: 2023-07-28T12:04:27Z
date_updated: 2023-07-28T12:05:15Z
department:
- _id: '27'
- _id: '518'
doi: 10.1109/ipdps49936.2021.00116
language:
- iso: eng
publication: 2021 IEEE International Parallel and Distributed Processing Symposium
(IPDPS)
publication_status: published
publisher: IEEE
quality_controlled: '1'
status: public
title: 'High-Performance Spectral Element Methods on Field-Programmable Gate Arrays
: Implementation, Evaluation, and Future Projection'
type: conference
user_id: '3145'
year: '2021'
...
---
_id: '21587'
abstract:
- lang: eng
text: Solving partial differential equations on unstructured grids is a cornerstone
of engineering and scientific computing. Nowadays, heterogeneous parallel platforms
with CPUs, GPUs, and FPGAs enable energy-efficient and computationally demanding
simulations. We developed the HighPerMeshes C++-embedded Domain-Specific Language
(DSL) for bridging the abstraction gap between the mathematical and algorithmic
formulation of mesh-based algorithms for PDE problems on the one hand and an increasing
number of heterogeneous platforms with their different parallel programming and
runtime models on the other hand. Thus, the HighPerMeshes DSL aims at higher productivity
in the code development process for multiple target platforms. We introduce the
concepts as well as the basic structure of the HighPerMeshes DSL, and demonstrate
its usage with three examples, a Poisson and monodomain problem, respectively,
solved by the continuous finite element method, and the discontinuous Galerkin
method for Maxwell’s equation. The mapping of the abstract algorithmic description
onto parallel hardware, including distributed memory compute clusters, is presented.
Finally, the achievable performance and scalability are demonstrated for a typical
example problem on a multi-core CPU cluster.
author:
- first_name: Samer
full_name: Alhaddad, Samer
id: '42456'
last_name: Alhaddad
- first_name: Jens
full_name: Förstner, Jens
id: '158'
last_name: Förstner
orcid: 0000-0001-7059-9862
- first_name: Stefan
full_name: Groth, Stefan
last_name: Groth
- first_name: Daniel
full_name: Grünewald, Daniel
last_name: Grünewald
- first_name: Yevgen
full_name: Grynko, Yevgen
id: '26059'
last_name: Grynko
- first_name: Frank
full_name: Hannig, Frank
last_name: Hannig
- first_name: Tobias
full_name: Kenter, Tobias
id: '3145'
last_name: Kenter
- first_name: Franz-Josef
full_name: Pfreundt, Franz-Josef
last_name: Pfreundt
- first_name: Christian
full_name: Plessl, Christian
id: '16153'
last_name: Plessl
orcid: 0000-0001-5728-9982
- first_name: Merlind
full_name: Schotte, Merlind
last_name: Schotte
- first_name: Thomas
full_name: Steinke, Thomas
last_name: Steinke
- first_name: Jürgen
full_name: Teich, Jürgen
last_name: Teich
- first_name: Martin
full_name: Weiser, Martin
last_name: Weiser
- first_name: Florian
full_name: Wende, Florian
last_name: Wende
citation:
ama: 'Alhaddad S, Förstner J, Groth S, et al. HighPerMeshes – A Domain-Specific
Language for Numerical Algorithms on Unstructured Grids. In: Euro-Par 2020:
Parallel Processing Workshops. ; 2021. doi:10.1007/978-3-030-71593-9_15'
apa: 'Alhaddad, S., Förstner, J., Groth, S., Grünewald, D., Grynko, Y., Hannig,
F., Kenter, T., Pfreundt, F.-J., Plessl, C., Schotte, M., Steinke, T., Teich,
J., Weiser, M., & Wende, F. (2021). HighPerMeshes – A Domain-Specific Language
for Numerical Algorithms on Unstructured Grids. In Euro-Par 2020: Parallel
Processing Workshops. https://doi.org/10.1007/978-3-030-71593-9_15'
bibtex: '@inbook{Alhaddad_Förstner_Groth_Grünewald_Grynko_Hannig_Kenter_Pfreundt_Plessl_Schotte_et
al._2021, place={Cham}, title={HighPerMeshes – A Domain-Specific Language for
Numerical Algorithms on Unstructured Grids}, DOI={10.1007/978-3-030-71593-9_15},
booktitle={Euro-Par 2020: Parallel Processing Workshops}, author={Alhaddad, Samer
and Förstner, Jens and Groth, Stefan and Grünewald, Daniel and Grynko, Yevgen
and Hannig, Frank and Kenter, Tobias and Pfreundt, Franz-Josef and Plessl, Christian
and Schotte, Merlind and et al.}, year={2021} }'
chicago: 'Alhaddad, Samer, Jens Förstner, Stefan Groth, Daniel Grünewald, Yevgen
Grynko, Frank Hannig, Tobias Kenter, et al. “HighPerMeshes – A Domain-Specific
Language for Numerical Algorithms on Unstructured Grids.” In Euro-Par 2020:
Parallel Processing Workshops. Cham, 2021. https://doi.org/10.1007/978-3-030-71593-9_15.'
ieee: 'S. Alhaddad et al., “HighPerMeshes – A Domain-Specific Language for
Numerical Algorithms on Unstructured Grids,” in Euro-Par 2020: Parallel Processing
Workshops, Cham, 2021.'
mla: 'Alhaddad, Samer, et al. “HighPerMeshes – A Domain-Specific Language for Numerical
Algorithms on Unstructured Grids.” Euro-Par 2020: Parallel Processing Workshops,
2021, doi:10.1007/978-3-030-71593-9_15.'
short: 'S. Alhaddad, J. Förstner, S. Groth, D. Grünewald, Y. Grynko, F. Hannig,
T. Kenter, F.-J. Pfreundt, C. Plessl, M. Schotte, T. Steinke, J. Teich, M. Weiser,
F. Wende, in: Euro-Par 2020: Parallel Processing Workshops, Cham, 2021.'
date_created: 2021-03-31T19:39:42Z
date_updated: 2023-09-26T11:40:25Z
ddc:
- '004'
department:
- _id: '61'
- _id: '230'
- _id: '429'
- _id: '27'
- _id: '518'
doi: 10.1007/978-3-030-71593-9_15
file:
- access_level: closed
content_type: application/pdf
creator: fossie
date_created: 2021-03-31T19:42:52Z
date_updated: 2021-03-31T19:42:52Z
file_id: '21588'
file_name: 2021-03 Alhaddad2021_Chapter_HighPerMeshesADomain-SpecificL.pdf
file_size: 564398
relation: main_file
success: 1
file_date_updated: 2021-03-31T19:42:52Z
has_accepted_license: '1'
keyword:
- tet_topic_hpc
language:
- iso: eng
place: Cham
project:
- _id: '52'
name: Computing Resources Provided by the Paderborn Center for Parallel Computing
publication: 'Euro-Par 2020: Parallel Processing Workshops'
publication_identifier:
isbn:
- '9783030715922'
- '9783030715939'
issn:
- 0302-9743
- 1611-3349
publication_status: published
quality_controlled: '1'
status: public
title: HighPerMeshes – A Domain-Specific Language for Numerical Algorithms on Unstructured
Grids
type: book_chapter
user_id: '15278'
year: '2021'
...