---
_id: '32404'
abstract:
- lang: eng
text: "The CP2K program package, which can be considered as the swiss army knife
of\r\natomistic simulations, is presented with a special emphasis on ab-initio\r\nmolecular
dynamics using the second-generation Car-Parrinello method. After\r\noutlining
current and near-term development efforts with regards to massively\r\nparallel
low-scaling post-Hartree-Fock and eigenvalue solvers, novel approaches\r\non how
we plan to take full advantage of future low-precision hardware\r\narchitectures
are introduced. Our focus here is on combining our submatrix\r\nmethod with the
approximate computing paradigm to address the immanent exascale\r\nera."
author:
- first_name: Thomas
full_name: Kühne, Thomas
id: '49079'
last_name: Kühne
- first_name: Christian
full_name: Plessl, Christian
id: '16153'
last_name: Plessl
orcid: 0000-0001-5728-9982
- first_name: Robert
full_name: Schade, Robert
id: '75963'
last_name: Schade
orcid: 0000-0002-6268-539
- first_name: Ole
full_name: Schütt, Ole
last_name: Schütt
citation:
ama: Kühne T, Plessl C, Schade R, Schütt O. CP2K on the road to exascale. arXiv:220514741.
Published online 2022.
apa: Kühne, T., Plessl, C., Schade, R., & Schütt, O. (2022). CP2K on the road
to exascale. In arXiv:2205.14741.
bibtex: '@article{Kühne_Plessl_Schade_Schütt_2022, title={CP2K on the road to exascale},
journal={arXiv:2205.14741}, author={Kühne, Thomas and Plessl, Christian and Schade,
Robert and Schütt, Ole}, year={2022} }'
chicago: Kühne, Thomas, Christian Plessl, Robert Schade, and Ole Schütt. “CP2K on
the Road to Exascale.” ArXiv:2205.14741, 2022.
ieee: T. Kühne, C. Plessl, R. Schade, and O. Schütt, “CP2K on the road to exascale,”
arXiv:2205.14741. 2022.
mla: Kühne, Thomas, et al. “CP2K on the Road to Exascale.” ArXiv:2205.14741,
2022.
short: T. Kühne, C. Plessl, R. Schade, O. Schütt, ArXiv:2205.14741 (2022).
date_created: 2022-07-22T08:14:08Z
date_updated: 2023-08-02T14:55:35Z
department:
- _id: '27'
- _id: '518'
- _id: '304'
external_id:
arxiv:
- '2205.14741'
language:
- iso: eng
main_file_link:
- url: https://arxiv.org/abs/2205.14741
project:
- _id: '52'
name: 'PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing'
publication: arXiv:2205.14741
status: public
title: CP2K on the road to exascale
type: preprint
user_id: '75963'
year: '2022'
...
---
_id: '33226'
abstract:
- lang: eng
text: A parallel hybrid quantum-classical algorithm for the solution of the quantum-chemical
ground-state energy problem on gate-based quantum computers is presented. This
approach is based on the reduced density-matrix functional theory (RDMFT) formulation
of the electronic structure problem. For that purpose, the density-matrix functional
of the full system is decomposed into an indirectly coupled sum of density-matrix
functionals for all its subsystems using the adaptive cluster approximation to
RDMFT. The approximations involved in the decomposition and the adaptive cluster
approximation itself can be systematically converged to the exact result. The
solutions for the density-matrix functionals of the effective subsystems involves
a constrained minimization over many-particle states that are approximated by
parametrized trial states on the quantum computer similarly to the variational
quantum eigensolver. The independence of the density-matrix functionals of the
effective subsystems introduces a new level of parallelization and allows for
the computational treatment of much larger molecules on a quantum computer with
a given qubit count. In addition, for the proposed algorithm techniques are presented
to reduce the qubit count, the number of quantum programs, as well as its depth.
The evaluation of a density-matrix functional as the essential part of our approach
is demonstrated for Hubbard-like systems on IBM quantum computers based on superconducting
transmon qubits.
article_type: original
author:
- first_name: Robert
full_name: Schade, Robert
id: '75963'
last_name: Schade
orcid: 0000-0002-6268-539
- first_name: Carsten
full_name: Bauer, Carsten
id: '90082'
last_name: Bauer
- first_name: Konstantin
full_name: Tamoev, Konstantin
id: '50177'
last_name: Tamoev
- first_name: Lukas
full_name: Mazur, Lukas
id: '90492'
last_name: Mazur
orcid: ' 0000-0001-6304-7082'
- first_name: Christian
full_name: Plessl, Christian
id: '16153'
last_name: Plessl
orcid: 0000-0001-5728-9982
- first_name: Thomas
full_name: Kühne, Thomas
id: '49079'
last_name: Kühne
citation:
ama: Schade R, Bauer C, Tamoev K, Mazur L, Plessl C, Kühne T. Parallel quantum chemistry
on noisy intermediate-scale quantum computers. Phys Rev Research. 2022;4:033160.
doi:10.1103/PhysRevResearch.4.033160
apa: Schade, R., Bauer, C., Tamoev, K., Mazur, L., Plessl, C., & Kühne, T. (2022).
Parallel quantum chemistry on noisy intermediate-scale quantum computers. Phys.
Rev. Research, 4, 033160. https://doi.org/10.1103/PhysRevResearch.4.033160
bibtex: '@article{Schade_Bauer_Tamoev_Mazur_Plessl_Kühne_2022, title={Parallel quantum
chemistry on noisy intermediate-scale quantum computers}, volume={4}, DOI={10.1103/PhysRevResearch.4.033160},
journal={Phys. Rev. Research}, publisher={American Physical Society}, author={Schade,
Robert and Bauer, Carsten and Tamoev, Konstantin and Mazur, Lukas and Plessl,
Christian and Kühne, Thomas}, year={2022}, pages={033160} }'
chicago: 'Schade, Robert, Carsten Bauer, Konstantin Tamoev, Lukas Mazur, Christian
Plessl, and Thomas Kühne. “Parallel Quantum Chemistry on Noisy Intermediate-Scale
Quantum Computers.” Phys. Rev. Research 4 (2022): 033160. https://doi.org/10.1103/PhysRevResearch.4.033160.'
ieee: 'R. Schade, C. Bauer, K. Tamoev, L. Mazur, C. Plessl, and T. Kühne, “Parallel
quantum chemistry on noisy intermediate-scale quantum computers,” Phys. Rev.
Research, vol. 4, p. 033160, 2022, doi: 10.1103/PhysRevResearch.4.033160.'
mla: Schade, Robert, et al. “Parallel Quantum Chemistry on Noisy Intermediate-Scale
Quantum Computers.” Phys. Rev. Research, vol. 4, American Physical Society,
2022, p. 033160, doi:10.1103/PhysRevResearch.4.033160.
short: R. Schade, C. Bauer, K. Tamoev, L. Mazur, C. Plessl, T. Kühne, Phys. Rev.
Research 4 (2022) 033160.
date_created: 2022-08-29T14:07:01Z
date_updated: 2023-08-02T15:04:22Z
department:
- _id: '27'
- _id: '518'
doi: 10.1103/PhysRevResearch.4.033160
intvolume: ' 4'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://journals.aps.org/prresearch/abstract/10.1103/PhysRevResearch.4.033160
oa: '1'
page: '033160'
project:
- _id: '52'
name: 'PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing'
publication: Phys. Rev. Research
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
status: public
title: Parallel quantum chemistry on noisy intermediate-scale quantum computers
type: journal_article
user_id: '75963'
volume: 4
year: '2022'
...
---
_id: '33684'
article_number: '102920'
author:
- first_name: Robert
full_name: Schade, Robert
id: '75963'
last_name: Schade
orcid: 0000-0002-6268-539
- first_name: Tobias
full_name: Kenter, Tobias
id: '3145'
last_name: Kenter
- first_name: Hossam
full_name: Elgabarty, Hossam
id: '60250'
last_name: Elgabarty
orcid: 0000-0002-4945-1481
- first_name: Michael
full_name: Lass, Michael
id: '24135'
last_name: Lass
orcid: 0000-0002-5708-7632
- first_name: Ole
full_name: Schütt, Ole
last_name: Schütt
- first_name: Alfio
full_name: Lazzaro, Alfio
last_name: Lazzaro
- first_name: Hans
full_name: Pabst, Hans
last_name: Pabst
- first_name: Stephan
full_name: Mohr, Stephan
last_name: Mohr
- first_name: Jürg
full_name: Hutter, Jürg
last_name: Hutter
- first_name: Thomas
full_name: Kühne, Thomas
id: '49079'
last_name: Kühne
- first_name: Christian
full_name: Plessl, Christian
id: '16153'
last_name: Plessl
orcid: 0000-0001-5728-9982
citation:
ama: Schade R, Kenter T, Elgabarty H, et al. Towards electronic structure-based
ab-initio molecular dynamics simulations with hundreds of millions of atoms. Parallel
Computing. 2022;111. doi:10.1016/j.parco.2022.102920
apa: Schade, R., Kenter, T., Elgabarty, H., Lass, M., Schütt, O., Lazzaro, A., Pabst,
H., Mohr, S., Hutter, J., Kühne, T., & Plessl, C. (2022). Towards electronic
structure-based ab-initio molecular dynamics simulations with hundreds of millions
of atoms. Parallel Computing, 111, Article 102920. https://doi.org/10.1016/j.parco.2022.102920
bibtex: '@article{Schade_Kenter_Elgabarty_Lass_Schütt_Lazzaro_Pabst_Mohr_Hutter_Kühne_et
al._2022, title={Towards electronic structure-based ab-initio molecular dynamics
simulations with hundreds of millions of atoms}, volume={111}, DOI={10.1016/j.parco.2022.102920},
number={102920}, journal={Parallel Computing}, publisher={Elsevier BV}, author={Schade,
Robert and Kenter, Tobias and Elgabarty, Hossam and Lass, Michael and Schütt,
Ole and Lazzaro, Alfio and Pabst, Hans and Mohr, Stephan and Hutter, Jürg and
Kühne, Thomas and et al.}, year={2022} }'
chicago: Schade, Robert, Tobias Kenter, Hossam Elgabarty, Michael Lass, Ole Schütt,
Alfio Lazzaro, Hans Pabst, et al. “Towards Electronic Structure-Based Ab-Initio
Molecular Dynamics Simulations with Hundreds of Millions of Atoms.” Parallel
Computing 111 (2022). https://doi.org/10.1016/j.parco.2022.102920.
ieee: 'R. Schade et al., “Towards electronic structure-based ab-initio molecular
dynamics simulations with hundreds of millions of atoms,” Parallel Computing,
vol. 111, Art. no. 102920, 2022, doi: 10.1016/j.parco.2022.102920.'
mla: Schade, Robert, et al. “Towards Electronic Structure-Based Ab-Initio Molecular
Dynamics Simulations with Hundreds of Millions of Atoms.” Parallel Computing,
vol. 111, 102920, Elsevier BV, 2022, doi:10.1016/j.parco.2022.102920.
short: R. Schade, T. Kenter, H. Elgabarty, M. Lass, O. Schütt, A. Lazzaro, H. Pabst,
S. Mohr, J. Hutter, T. Kühne, C. Plessl, Parallel Computing 111 (2022).
date_created: 2022-10-11T08:17:02Z
date_updated: 2023-08-02T15:03:55Z
department:
- _id: '613'
- _id: '27'
- _id: '518'
doi: 10.1016/j.parco.2022.102920
intvolume: ' 111'
keyword:
- Artificial Intelligence
- Computer Graphics and Computer-Aided Design
- Computer Networks and Communications
- Hardware and Architecture
- Theoretical Computer Science
- Software
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.sciencedirect.com/science/article/pii/S0167819122000242
oa: '1'
project:
- _id: '52'
name: 'PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing'
publication: Parallel Computing
publication_identifier:
issn:
- 0167-8191
publication_status: published
publisher: Elsevier BV
quality_controlled: '1'
status: public
title: Towards electronic structure-based ab-initio molecular dynamics simulations
with hundreds of millions of atoms
type: journal_article
user_id: '75963'
volume: 111
year: '2022'
...
---
_id: '27364'
author:
- first_name: Marius
full_name: Meyer, Marius
id: '40778'
last_name: Meyer
- first_name: Tobias
full_name: Kenter, Tobias
id: '3145'
last_name: Kenter
- first_name: Christian
full_name: Plessl, Christian
id: '16153'
last_name: Plessl
orcid: 0000-0001-5728-9982
citation:
ama: Meyer M, Kenter T, Plessl C. In-depth FPGA Accelerator Performance Evaluation
with Single Node Benchmarks from the HPC Challenge Benchmark Suite for Intel and
Xilinx FPGAs using OpenCL. Journal of Parallel and Distributed Computing.
Published online 2022. doi:10.1016/j.jpdc.2021.10.007
apa: Meyer, M., Kenter, T., & Plessl, C. (2022). In-depth FPGA Accelerator Performance
Evaluation with Single Node Benchmarks from the HPC Challenge Benchmark Suite
for Intel and Xilinx FPGAs using OpenCL. Journal of Parallel and Distributed
Computing. https://doi.org/10.1016/j.jpdc.2021.10.007
bibtex: '@article{Meyer_Kenter_Plessl_2022, title={In-depth FPGA Accelerator Performance
Evaluation with Single Node Benchmarks from the HPC Challenge Benchmark Suite
for Intel and Xilinx FPGAs using OpenCL}, DOI={10.1016/j.jpdc.2021.10.007},
journal={Journal of Parallel and Distributed Computing}, author={Meyer, Marius
and Kenter, Tobias and Plessl, Christian}, year={2022} }'
chicago: Meyer, Marius, Tobias Kenter, and Christian Plessl. “In-Depth FPGA Accelerator
Performance Evaluation with Single Node Benchmarks from the HPC Challenge Benchmark
Suite for Intel and Xilinx FPGAs Using OpenCL.” Journal of Parallel and Distributed
Computing, 2022. https://doi.org/10.1016/j.jpdc.2021.10.007.
ieee: 'M. Meyer, T. Kenter, and C. Plessl, “In-depth FPGA Accelerator Performance
Evaluation with Single Node Benchmarks from the HPC Challenge Benchmark Suite
for Intel and Xilinx FPGAs using OpenCL,” Journal of Parallel and Distributed
Computing, 2022, doi: 10.1016/j.jpdc.2021.10.007.'
mla: Meyer, Marius, et al. “In-Depth FPGA Accelerator Performance Evaluation with
Single Node Benchmarks from the HPC Challenge Benchmark Suite for Intel and Xilinx
FPGAs Using OpenCL.” Journal of Parallel and Distributed Computing, 2022,
doi:10.1016/j.jpdc.2021.10.007.
short: M. Meyer, T. Kenter, C. Plessl, Journal of Parallel and Distributed Computing
(2022).
date_created: 2021-11-10T14:36:27Z
date_updated: 2023-09-26T10:26:56Z
department:
- _id: '27'
- _id: '518'
doi: 10.1016/j.jpdc.2021.10.007
language:
- iso: eng
project:
- _id: '52'
name: Computing Resources Provided by the Paderborn Center for Parallel Computing
publication: Journal of Parallel and Distributed Computing
publication_identifier:
issn:
- 0743-7315
publication_status: published
quality_controlled: '1'
status: public
title: In-depth FPGA Accelerator Performance Evaluation with Single Node Benchmarks
from the HPC Challenge Benchmark Suite for Intel and Xilinx FPGAs using OpenCL
type: journal_article
user_id: '15278'
year: '2022'
...
---
_id: '28099'
abstract:
- lang: eng
text: N-body methods are one of the essential algorithmic building blocks of high-performance
and parallel computing. Previous research has shown promising performance for
implementing n-body simulations with pairwise force calculations on FPGAs. However,
to avoid challenges with accumulation and memory access patterns, the presented
designs calculate each pair of forces twice, along with both force sums of the
involved particles. Also, they require large problem instances with hundreds of
thousands of particles to reach their respective peak performance, limiting the
applicability for strong scaling scenarios. This work addresses both issues by
presenting a novel FPGA design that uses each calculated force twice and overlaps
data transfers and computations in a way that allows to reach peak performance
even for small problem instances, outperforming previous single precision results
even in double precision, and scaling linearly over multiple interconnected FPGAs.
For a comparison across architectures, we provide an equally optimized CPU reference,
which for large problems actually achieves higher peak performance per device,
however, given the strong scaling advantages of the FPGA design, in parallel setups
with few thousand particles per device, the FPGA platform achieves highest performance
and power efficiency.
article_type: original
author:
- first_name: Johannes
full_name: Menzel, Johannes
last_name: Menzel
- first_name: Christian
full_name: Plessl, Christian
id: '16153'
last_name: Plessl
orcid: 0000-0001-5728-9982
- first_name: Tobias
full_name: Kenter, Tobias
id: '3145'
last_name: Kenter
citation:
ama: Menzel J, Plessl C, Kenter T. The Strong Scaling Advantage of FPGAs in HPC
for N-body Simulations. ACM Transactions on Reconfigurable Technology and Systems.
2021;15(1):1-30. doi:10.1145/3491235
apa: Menzel, J., Plessl, C., & Kenter, T. (2021). The Strong Scaling Advantage
of FPGAs in HPC for N-body Simulations. ACM Transactions on Reconfigurable
Technology and Systems, 15(1), 1–30. https://doi.org/10.1145/3491235
bibtex: '@article{Menzel_Plessl_Kenter_2021, title={The Strong Scaling Advantage
of FPGAs in HPC for N-body Simulations}, volume={15}, DOI={10.1145/3491235},
number={1}, journal={ACM Transactions on Reconfigurable Technology and Systems},
author={Menzel, Johannes and Plessl, Christian and Kenter, Tobias}, year={2021},
pages={1–30} }'
chicago: 'Menzel, Johannes, Christian Plessl, and Tobias Kenter. “The Strong Scaling
Advantage of FPGAs in HPC for N-Body Simulations.” ACM Transactions on Reconfigurable
Technology and Systems 15, no. 1 (2021): 1–30. https://doi.org/10.1145/3491235.'
ieee: 'J. Menzel, C. Plessl, and T. Kenter, “The Strong Scaling Advantage of FPGAs
in HPC for N-body Simulations,” ACM Transactions on Reconfigurable Technology
and Systems, vol. 15, no. 1, pp. 1–30, 2021, doi: 10.1145/3491235.'
mla: Menzel, Johannes, et al. “The Strong Scaling Advantage of FPGAs in HPC for
N-Body Simulations.” ACM Transactions on Reconfigurable Technology and Systems,
vol. 15, no. 1, 2021, pp. 1–30, doi:10.1145/3491235.
short: J. Menzel, C. Plessl, T. Kenter, ACM Transactions on Reconfigurable Technology
and Systems 15 (2021) 1–30.
date_created: 2021-11-30T10:00:31Z
date_updated: 2022-01-06T06:57:51Z
department:
- _id: '27'
- _id: '518'
doi: 10.1145/3491235
intvolume: ' 15'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://dl.acm.org/doi/10.1145/3491235
oa: '1'
page: 1-30
publication: ACM Transactions on Reconfigurable Technology and Systems
publication_identifier:
issn:
- 1936-7406
- 1936-7414
publication_status: published
quality_controlled: '1'
status: public
title: The Strong Scaling Advantage of FPGAs in HPC for N-body Simulations
type: journal_article
user_id: '3145'
volume: 15
year: '2021'
...
---
_id: '29937'
author:
- first_name: Martin
full_name: Karp, Martin
last_name: Karp
- first_name: Artur
full_name: Podobas, Artur
last_name: Podobas
- first_name: Niclas
full_name: Jansson, Niclas
last_name: Jansson
- first_name: Tobias
full_name: Kenter, Tobias
id: '3145'
last_name: Kenter
- first_name: Christian
full_name: Plessl, Christian
id: '16153'
last_name: Plessl
orcid: 0000-0001-5728-9982
- first_name: Philipp
full_name: Schlatter, Philipp
last_name: Schlatter
- first_name: Stefano
full_name: Markidis, Stefano
last_name: Markidis
citation:
ama: 'Karp M, Podobas A, Jansson N, et al. High-Performance Spectral Element Methods
on Field-Programmable Gate Arrays : Implementation, Evaluation, and Future Projection.
In: 2021 IEEE International Parallel and Distributed Processing Symposium (IPDPS).
IEEE; 2021. doi:10.1109/ipdps49936.2021.00116'
apa: 'Karp, M., Podobas, A., Jansson, N., Kenter, T., Plessl, C., Schlatter, P.,
& Markidis, S. (2021). High-Performance Spectral Element Methods on Field-Programmable
Gate Arrays : Implementation, Evaluation, and Future Projection. 2021 IEEE
International Parallel and Distributed Processing Symposium (IPDPS). https://doi.org/10.1109/ipdps49936.2021.00116'
bibtex: '@inproceedings{Karp_Podobas_Jansson_Kenter_Plessl_Schlatter_Markidis_2021,
title={High-Performance Spectral Element Methods on Field-Programmable Gate Arrays :
Implementation, Evaluation, and Future Projection}, DOI={10.1109/ipdps49936.2021.00116},
booktitle={2021 IEEE International Parallel and Distributed Processing Symposium
(IPDPS)}, publisher={IEEE}, author={Karp, Martin and Podobas, Artur and Jansson,
Niclas and Kenter, Tobias and Plessl, Christian and Schlatter, Philipp and Markidis,
Stefano}, year={2021} }'
chicago: 'Karp, Martin, Artur Podobas, Niclas Jansson, Tobias Kenter, Christian
Plessl, Philipp Schlatter, and Stefano Markidis. “High-Performance Spectral Element
Methods on Field-Programmable Gate Arrays : Implementation, Evaluation, and Future
Projection.” In 2021 IEEE International Parallel and Distributed Processing
Symposium (IPDPS). IEEE, 2021. https://doi.org/10.1109/ipdps49936.2021.00116.'
ieee: 'M. Karp et al., “High-Performance Spectral Element Methods on Field-Programmable
Gate Arrays : Implementation, Evaluation, and Future Projection,” 2021, doi: 10.1109/ipdps49936.2021.00116.'
mla: 'Karp, Martin, et al. “High-Performance Spectral Element Methods on Field-Programmable
Gate Arrays : Implementation, Evaluation, and Future Projection.” 2021 IEEE
International Parallel and Distributed Processing Symposium (IPDPS), IEEE,
2021, doi:10.1109/ipdps49936.2021.00116.'
short: 'M. Karp, A. Podobas, N. Jansson, T. Kenter, C. Plessl, P. Schlatter, S.
Markidis, in: 2021 IEEE International Parallel and Distributed Processing Symposium
(IPDPS), IEEE, 2021.'
date_created: 2022-02-21T14:26:37Z
date_updated: 2024-01-22T09:59:13Z
department:
- _id: '27'
- _id: '518'
doi: 10.1109/ipdps49936.2021.00116
language:
- iso: eng
project:
- _id: '52'
name: 'PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing'
publication: 2021 IEEE International Parallel and Distributed Processing Symposium
(IPDPS)
publication_status: published
publisher: IEEE
quality_controlled: '1'
status: public
title: 'High-Performance Spectral Element Methods on Field-Programmable Gate Arrays
: Implementation, Evaluation, and Future Projection'
type: conference
user_id: '3145'
year: '2021'
...
---
_id: '46194'
author:
- first_name: Tobias
full_name: Kenter, Tobias
id: '3145'
last_name: Kenter
- first_name: Adesh
full_name: Shambhu, Adesh
last_name: Shambhu
- first_name: Sara
full_name: Faghih-Naini, Sara
last_name: Faghih-Naini
- first_name: Vadym
full_name: Aizinger, Vadym
last_name: Aizinger
citation:
ama: 'Kenter T, Shambhu A, Faghih-Naini S, Aizinger V. Algorithm-hardware co-design
of a discontinuous Galerkin shallow-water model for a dataflow architecture on
FPGA. In: Proceedings of the Platform for Advanced Scientific Computing Conference
(PASC). ACM; 2021. doi:10.1145/3468267.3470617'
apa: Kenter, T., Shambhu, A., Faghih-Naini, S., & Aizinger, V. (2021). Algorithm-hardware
co-design of a discontinuous Galerkin shallow-water model for a dataflow architecture
on FPGA. Proceedings of the Platform for Advanced Scientific Computing Conference
(PASC). https://doi.org/10.1145/3468267.3470617
bibtex: '@inproceedings{Kenter_Shambhu_Faghih-Naini_Aizinger_2021, title={Algorithm-hardware
co-design of a discontinuous Galerkin shallow-water model for a dataflow architecture
on FPGA}, DOI={10.1145/3468267.3470617},
booktitle={Proceedings of the Platform for Advanced Scientific Computing Conference
(PASC)}, publisher={ACM}, author={Kenter, Tobias and Shambhu, Adesh and Faghih-Naini,
Sara and Aizinger, Vadym}, year={2021} }'
chicago: Kenter, Tobias, Adesh Shambhu, Sara Faghih-Naini, and Vadym Aizinger. “Algorithm-Hardware
Co-Design of a Discontinuous Galerkin Shallow-Water Model for a Dataflow Architecture
on FPGA.” In Proceedings of the Platform for Advanced Scientific Computing
Conference (PASC). ACM, 2021. https://doi.org/10.1145/3468267.3470617.
ieee: 'T. Kenter, A. Shambhu, S. Faghih-Naini, and V. Aizinger, “Algorithm-hardware
co-design of a discontinuous Galerkin shallow-water model for a dataflow architecture
on FPGA,” 2021, doi: 10.1145/3468267.3470617.'
mla: Kenter, Tobias, et al. “Algorithm-Hardware Co-Design of a Discontinuous Galerkin
Shallow-Water Model for a Dataflow Architecture on FPGA.” Proceedings of the
Platform for Advanced Scientific Computing Conference (PASC), ACM, 2021, doi:10.1145/3468267.3470617.
short: 'T. Kenter, A. Shambhu, S. Faghih-Naini, V. Aizinger, in: Proceedings of
the Platform for Advanced Scientific Computing Conference (PASC), ACM, 2021.'
date_created: 2023-07-28T11:58:14Z
date_updated: 2024-04-17T08:12:21Z
department:
- _id: '27'
- _id: '518'
doi: 10.1145/3468267.3470617
language:
- iso: eng
main_file_link:
- url: https://dl.acm.org/doi/pdf/10.1145/3468267.3470617
project:
- _id: '52'
name: 'PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing'
publication: Proceedings of the Platform for Advanced Scientific Computing Conference
(PASC)
publication_status: published
publisher: ACM
quality_controlled: '1'
related_material:
link:
- description: Open Access available via this link.
relation: other
url: ' https://www.sighpc.org/for-our-community/acm-open-tocs/pasc21-open-toc '
status: public
title: Algorithm-hardware co-design of a discontinuous Galerkin shallow-water model
for a dataflow architecture on FPGA
type: conference
user_id: '3145'
year: '2021'
...
---
_id: '46195'
author:
- first_name: Martin
full_name: Karp, Martin
last_name: Karp
- first_name: Artur
full_name: Podobas, Artur
last_name: Podobas
- first_name: Niclas
full_name: Jansson, Niclas
last_name: Jansson
- first_name: Tobias
full_name: Kenter, Tobias
id: '3145'
last_name: Kenter
- first_name: Christian
full_name: Plessl, Christian
id: '16153'
last_name: Plessl
orcid: 0000-0001-5728-9982
- first_name: Philipp
full_name: Schlatter, Philipp
last_name: Schlatter
- first_name: Stefano
full_name: Markidis, Stefano
last_name: Markidis
citation:
ama: 'Karp M, Podobas A, Jansson N, et al. High-Performance Spectral Element Methods
on Field-Programmable Gate Arrays : Implementation, Evaluation, and Future Projection.
In: 2021 IEEE International Parallel and Distributed Processing Symposium (IPDPS).
IEEE; 2021. doi:10.1109/ipdps49936.2021.00116'
apa: 'Karp, M., Podobas, A., Jansson, N., Kenter, T., Plessl, C., Schlatter, P.,
& Markidis, S. (2021). High-Performance Spectral Element Methods on Field-Programmable
Gate Arrays : Implementation, Evaluation, and Future Projection. 2021 IEEE
International Parallel and Distributed Processing Symposium (IPDPS). https://doi.org/10.1109/ipdps49936.2021.00116'
bibtex: '@inproceedings{Karp_Podobas_Jansson_Kenter_Plessl_Schlatter_Markidis_2021,
title={High-Performance Spectral Element Methods on Field-Programmable Gate Arrays :
Implementation, Evaluation, and Future Projection}, DOI={10.1109/ipdps49936.2021.00116},
booktitle={2021 IEEE International Parallel and Distributed Processing Symposium
(IPDPS)}, publisher={IEEE}, author={Karp, Martin and Podobas, Artur and Jansson,
Niclas and Kenter, Tobias and Plessl, Christian and Schlatter, Philipp and Markidis,
Stefano}, year={2021} }'
chicago: 'Karp, Martin, Artur Podobas, Niclas Jansson, Tobias Kenter, Christian
Plessl, Philipp Schlatter, and Stefano Markidis. “High-Performance Spectral Element
Methods on Field-Programmable Gate Arrays : Implementation, Evaluation, and Future
Projection.” In 2021 IEEE International Parallel and Distributed Processing
Symposium (IPDPS). IEEE, 2021. https://doi.org/10.1109/ipdps49936.2021.00116.'
ieee: 'M. Karp et al., “High-Performance Spectral Element Methods on Field-Programmable
Gate Arrays : Implementation, Evaluation, and Future Projection,” 2021, doi: 10.1109/ipdps49936.2021.00116.'
mla: 'Karp, Martin, et al. “High-Performance Spectral Element Methods on Field-Programmable
Gate Arrays : Implementation, Evaluation, and Future Projection.” 2021 IEEE
International Parallel and Distributed Processing Symposium (IPDPS), IEEE,
2021, doi:10.1109/ipdps49936.2021.00116.'
short: 'M. Karp, A. Podobas, N. Jansson, T. Kenter, C. Plessl, P. Schlatter, S.
Markidis, in: 2021 IEEE International Parallel and Distributed Processing Symposium
(IPDPS), IEEE, 2021.'
date_created: 2023-07-28T12:04:27Z
date_updated: 2023-07-28T12:05:15Z
department:
- _id: '27'
- _id: '518'
doi: 10.1109/ipdps49936.2021.00116
language:
- iso: eng
publication: 2021 IEEE International Parallel and Distributed Processing Symposium
(IPDPS)
publication_status: published
publisher: IEEE
quality_controlled: '1'
status: public
title: 'High-Performance Spectral Element Methods on Field-Programmable Gate Arrays
: Implementation, Evaluation, and Future Projection'
type: conference
user_id: '3145'
year: '2021'
...
---
_id: '21587'
abstract:
- lang: eng
text: Solving partial differential equations on unstructured grids is a cornerstone
of engineering and scientific computing. Nowadays, heterogeneous parallel platforms
with CPUs, GPUs, and FPGAs enable energy-efficient and computationally demanding
simulations. We developed the HighPerMeshes C++-embedded Domain-Specific Language
(DSL) for bridging the abstraction gap between the mathematical and algorithmic
formulation of mesh-based algorithms for PDE problems on the one hand and an increasing
number of heterogeneous platforms with their different parallel programming and
runtime models on the other hand. Thus, the HighPerMeshes DSL aims at higher productivity
in the code development process for multiple target platforms. We introduce the
concepts as well as the basic structure of the HighPerMeshes DSL, and demonstrate
its usage with three examples, a Poisson and monodomain problem, respectively,
solved by the continuous finite element method, and the discontinuous Galerkin
method for Maxwell’s equation. The mapping of the abstract algorithmic description
onto parallel hardware, including distributed memory compute clusters, is presented.
Finally, the achievable performance and scalability are demonstrated for a typical
example problem on a multi-core CPU cluster.
author:
- first_name: Samer
full_name: Alhaddad, Samer
id: '42456'
last_name: Alhaddad
- first_name: Jens
full_name: Förstner, Jens
id: '158'
last_name: Förstner
orcid: 0000-0001-7059-9862
- first_name: Stefan
full_name: Groth, Stefan
last_name: Groth
- first_name: Daniel
full_name: Grünewald, Daniel
last_name: Grünewald
- first_name: Yevgen
full_name: Grynko, Yevgen
id: '26059'
last_name: Grynko
- first_name: Frank
full_name: Hannig, Frank
last_name: Hannig
- first_name: Tobias
full_name: Kenter, Tobias
id: '3145'
last_name: Kenter
- first_name: Franz-Josef
full_name: Pfreundt, Franz-Josef
last_name: Pfreundt
- first_name: Christian
full_name: Plessl, Christian
id: '16153'
last_name: Plessl
orcid: 0000-0001-5728-9982
- first_name: Merlind
full_name: Schotte, Merlind
last_name: Schotte
- first_name: Thomas
full_name: Steinke, Thomas
last_name: Steinke
- first_name: Jürgen
full_name: Teich, Jürgen
last_name: Teich
- first_name: Martin
full_name: Weiser, Martin
last_name: Weiser
- first_name: Florian
full_name: Wende, Florian
last_name: Wende
citation:
ama: 'Alhaddad S, Förstner J, Groth S, et al. HighPerMeshes – A Domain-Specific
Language for Numerical Algorithms on Unstructured Grids. In: Euro-Par 2020:
Parallel Processing Workshops. ; 2021. doi:10.1007/978-3-030-71593-9_15'
apa: 'Alhaddad, S., Förstner, J., Groth, S., Grünewald, D., Grynko, Y., Hannig,
F., Kenter, T., Pfreundt, F.-J., Plessl, C., Schotte, M., Steinke, T., Teich,
J., Weiser, M., & Wende, F. (2021). HighPerMeshes – A Domain-Specific Language
for Numerical Algorithms on Unstructured Grids. In Euro-Par 2020: Parallel
Processing Workshops. https://doi.org/10.1007/978-3-030-71593-9_15'
bibtex: '@inbook{Alhaddad_Förstner_Groth_Grünewald_Grynko_Hannig_Kenter_Pfreundt_Plessl_Schotte_et
al._2021, place={Cham}, title={HighPerMeshes – A Domain-Specific Language for
Numerical Algorithms on Unstructured Grids}, DOI={10.1007/978-3-030-71593-9_15},
booktitle={Euro-Par 2020: Parallel Processing Workshops}, author={Alhaddad, Samer
and Förstner, Jens and Groth, Stefan and Grünewald, Daniel and Grynko, Yevgen
and Hannig, Frank and Kenter, Tobias and Pfreundt, Franz-Josef and Plessl, Christian
and Schotte, Merlind and et al.}, year={2021} }'
chicago: 'Alhaddad, Samer, Jens Förstner, Stefan Groth, Daniel Grünewald, Yevgen
Grynko, Frank Hannig, Tobias Kenter, et al. “HighPerMeshes – A Domain-Specific
Language for Numerical Algorithms on Unstructured Grids.” In Euro-Par 2020:
Parallel Processing Workshops. Cham, 2021. https://doi.org/10.1007/978-3-030-71593-9_15.'
ieee: 'S. Alhaddad et al., “HighPerMeshes – A Domain-Specific Language for
Numerical Algorithms on Unstructured Grids,” in Euro-Par 2020: Parallel Processing
Workshops, Cham, 2021.'
mla: 'Alhaddad, Samer, et al. “HighPerMeshes – A Domain-Specific Language for Numerical
Algorithms on Unstructured Grids.” Euro-Par 2020: Parallel Processing Workshops,
2021, doi:10.1007/978-3-030-71593-9_15.'
short: 'S. Alhaddad, J. Förstner, S. Groth, D. Grünewald, Y. Grynko, F. Hannig,
T. Kenter, F.-J. Pfreundt, C. Plessl, M. Schotte, T. Steinke, J. Teich, M. Weiser,
F. Wende, in: Euro-Par 2020: Parallel Processing Workshops, Cham, 2021.'
date_created: 2021-03-31T19:39:42Z
date_updated: 2023-09-26T11:40:25Z
ddc:
- '004'
department:
- _id: '61'
- _id: '230'
- _id: '429'
- _id: '27'
- _id: '518'
doi: 10.1007/978-3-030-71593-9_15
file:
- access_level: closed
content_type: application/pdf
creator: fossie
date_created: 2021-03-31T19:42:52Z
date_updated: 2021-03-31T19:42:52Z
file_id: '21588'
file_name: 2021-03 Alhaddad2021_Chapter_HighPerMeshesADomain-SpecificL.pdf
file_size: 564398
relation: main_file
success: 1
file_date_updated: 2021-03-31T19:42:52Z
has_accepted_license: '1'
keyword:
- tet_topic_hpc
language:
- iso: eng
place: Cham
project:
- _id: '52'
name: Computing Resources Provided by the Paderborn Center for Parallel Computing
publication: 'Euro-Par 2020: Parallel Processing Workshops'
publication_identifier:
isbn:
- '9783030715922'
- '9783030715939'
issn:
- 0302-9743
- 1611-3349
publication_status: published
quality_controlled: '1'
status: public
title: HighPerMeshes – A Domain-Specific Language for Numerical Algorithms on Unstructured
Grids
type: book_chapter
user_id: '15278'
year: '2021'
...
---
_id: '29936'
author:
- first_name: Arjun
full_name: Ramaswami, Arjun
id: '49171'
last_name: Ramaswami
orcid: https://orcid.org/0000-0002-0909-1178
- first_name: Tobias
full_name: Kenter, Tobias
id: '3145'
last_name: Kenter
- first_name: Thomas
full_name: Kühne, Thomas
id: '49079'
last_name: Kühne
- first_name: Christian
full_name: Plessl, Christian
id: '16153'
last_name: Plessl
orcid: 0000-0001-5728-9982
citation:
ama: 'Ramaswami A, Kenter T, Kühne T, Plessl C. Evaluating the Design Space for
Offloading 3D FFT Calculations to an FPGA for High-Performance Computing. In:
Applied Reconfigurable Computing. Architectures, Tools, and Applications.
Springer International Publishing; 2021. doi:10.1007/978-3-030-79025-7_21'
apa: Ramaswami, A., Kenter, T., Kühne, T., & Plessl, C. (2021). Evaluating the
Design Space for Offloading 3D FFT Calculations to an FPGA for High-Performance
Computing. In Applied Reconfigurable Computing. Architectures, Tools, and Applications.
Int. Conf. on Applied Reconfigurable Computing. Architectures, Tools, and Applications.
Springer International Publishing. https://doi.org/10.1007/978-3-030-79025-7_21
bibtex: '@inbook{Ramaswami_Kenter_Kühne_Plessl_2021, place={Cham}, title={Evaluating
the Design Space for Offloading 3D FFT Calculations to an FPGA for High-Performance
Computing}, DOI={10.1007/978-3-030-79025-7_21},
booktitle={Applied Reconfigurable Computing. Architectures, Tools, and Applications},
publisher={Springer International Publishing}, author={Ramaswami, Arjun and Kenter,
Tobias and Kühne, Thomas and Plessl, Christian}, year={2021} }'
chicago: 'Ramaswami, Arjun, Tobias Kenter, Thomas Kühne, and Christian Plessl. “Evaluating
the Design Space for Offloading 3D FFT Calculations to an FPGA for High-Performance
Computing.” In Applied Reconfigurable Computing. Architectures, Tools, and
Applications. Cham: Springer International Publishing, 2021. https://doi.org/10.1007/978-3-030-79025-7_21.'
ieee: 'A. Ramaswami, T. Kenter, T. Kühne, and C. Plessl, “Evaluating the Design
Space for Offloading 3D FFT Calculations to an FPGA for High-Performance Computing,”
in Applied Reconfigurable Computing. Architectures, Tools, and Applications,
Cham: Springer International Publishing, 2021.'
mla: Ramaswami, Arjun, et al. “Evaluating the Design Space for Offloading 3D FFT
Calculations to an FPGA for High-Performance Computing.” Applied Reconfigurable
Computing. Architectures, Tools, and Applications, Springer International
Publishing, 2021, doi:10.1007/978-3-030-79025-7_21.
short: 'A. Ramaswami, T. Kenter, T. Kühne, C. Plessl, in: Applied Reconfigurable
Computing. Architectures, Tools, and Applications, Springer International Publishing,
Cham, 2021.'
conference:
name: Int. Conf. on Applied Reconfigurable Computing. Architectures, Tools, and
Applications
date_created: 2022-02-21T14:22:01Z
date_updated: 2023-09-26T11:40:45Z
department:
- _id: '27'
- _id: '518'
- _id: '304'
doi: 10.1007/978-3-030-79025-7_21
language:
- iso: eng
place: Cham
publication: Applied Reconfigurable Computing. Architectures, Tools, and Applications
publication_identifier:
isbn:
- '9783030790240'
- '9783030790257'
issn:
- 0302-9743
- 1611-3349
publication_status: published
publisher: Springer International Publishing
quality_controlled: '1'
status: public
title: Evaluating the Design Space for Offloading 3D FFT Calculations to an FPGA for
High-Performance Computing
type: book_chapter
user_id: '15278'
year: '2021'
...
---
_id: '24788'
author:
- first_name: Samer
full_name: Alhaddad, Samer
id: '42456'
last_name: Alhaddad
- first_name: Jens
full_name: Förstner, Jens
id: '158'
last_name: Förstner
orcid: 0000-0001-7059-9862
- first_name: Stefan
full_name: Groth, Stefan
last_name: Groth
- first_name: Daniel
full_name: Grünewald, Daniel
last_name: Grünewald
- first_name: Yevgen
full_name: Grynko, Yevgen
id: '26059'
last_name: Grynko
- first_name: Frank
full_name: Hannig, Frank
last_name: Hannig
- first_name: Tobias
full_name: Kenter, Tobias
id: '3145'
last_name: Kenter
- first_name: Franz‐Josef
full_name: Pfreundt, Franz‐Josef
last_name: Pfreundt
- first_name: Christian
full_name: Plessl, Christian
id: '16153'
last_name: Plessl
orcid: 0000-0001-5728-9982
- first_name: Merlind
full_name: Schotte, Merlind
last_name: Schotte
- first_name: Thomas
full_name: Steinke, Thomas
last_name: Steinke
- first_name: Jürgen
full_name: Teich, Jürgen
last_name: Teich
- first_name: Martin
full_name: Weiser, Martin
last_name: Weiser
- first_name: Florian
full_name: Wende, Florian
last_name: Wende
citation:
ama: 'Alhaddad S, Förstner J, Groth S, et al. The HighPerMeshes framework for numerical
algorithms on unstructured grids. Concurrency and Computation: Practice and
Experience. Published online 2021:e6616. doi:10.1002/cpe.6616'
apa: 'Alhaddad, S., Förstner, J., Groth, S., Grünewald, D., Grynko, Y., Hannig,
F., Kenter, T., Pfreundt, F., Plessl, C., Schotte, M., Steinke, T., Teich, J.,
Weiser, M., & Wende, F. (2021). The HighPerMeshes framework for numerical
algorithms on unstructured grids. Concurrency and Computation: Practice and
Experience, e6616. https://doi.org/10.1002/cpe.6616'
bibtex: '@article{Alhaddad_Förstner_Groth_Grünewald_Grynko_Hannig_Kenter_Pfreundt_Plessl_Schotte_et
al._2021, title={The HighPerMeshes framework for numerical algorithms on unstructured
grids}, DOI={10.1002/cpe.6616},
journal={Concurrency and Computation: Practice and Experience}, author={Alhaddad,
Samer and Förstner, Jens and Groth, Stefan and Grünewald, Daniel and Grynko, Yevgen
and Hannig, Frank and Kenter, Tobias and Pfreundt, Franz‐Josef and Plessl, Christian
and Schotte, Merlind and et al.}, year={2021}, pages={e6616} }'
chicago: 'Alhaddad, Samer, Jens Förstner, Stefan Groth, Daniel Grünewald, Yevgen
Grynko, Frank Hannig, Tobias Kenter, et al. “The HighPerMeshes Framework for Numerical
Algorithms on Unstructured Grids.” Concurrency and Computation: Practice and
Experience, 2021, e6616. https://doi.org/10.1002/cpe.6616.'
ieee: 'S. Alhaddad et al., “The HighPerMeshes framework for numerical algorithms
on unstructured grids,” Concurrency and Computation: Practice and Experience,
p. e6616, 2021, doi: 10.1002/cpe.6616.'
mla: 'Alhaddad, Samer, et al. “The HighPerMeshes Framework for Numerical Algorithms
on Unstructured Grids.” Concurrency and Computation: Practice and Experience,
2021, p. e6616, doi:10.1002/cpe.6616.'
short: 'S. Alhaddad, J. Förstner, S. Groth, D. Grünewald, Y. Grynko, F. Hannig,
T. Kenter, F. Pfreundt, C. Plessl, M. Schotte, T. Steinke, J. Teich, M. Weiser,
F. Wende, Concurrency and Computation: Practice and Experience (2021) e6616.'
date_created: 2021-09-22T06:15:50Z
date_updated: 2023-09-26T11:42:19Z
ddc:
- '004'
department:
- _id: '61'
- _id: '230'
- _id: '27'
- _id: '518'
doi: 10.1002/cpe.6616
file:
- access_level: open_access
content_type: application/pdf
creator: fossie
date_created: 2021-09-22T06:19:29Z
date_updated: 2021-09-22T06:19:29Z
file_id: '24789'
file_name: 2021-09 Alhaddad - Concurrency... - The HighPerMeshes framework for numerical
algorithms on unstructured grids.pdf
file_size: 2300152
relation: main_file
file_date_updated: 2021-09-22T06:19:29Z
has_accepted_license: '1'
keyword:
- tet_topic_hpc
language:
- iso: eng
oa: '1'
page: e6616
project:
- _id: '52'
name: Computing Resources Provided by the Paderborn Center for Parallel Computing
- _id: '33'
grant_number: 01|H16005A
name: HighPerMeshes
publication: 'Concurrency and Computation: Practice and Experience'
publication_identifier:
issn:
- 1532-0626
- 1532-0634
publication_status: published
quality_controlled: '1'
status: public
title: The HighPerMeshes framework for numerical algorithms on unstructured grids
type: journal_article
user_id: '15278'
year: '2021'
...
---
_id: '16277'
abstract:
- lang: eng
text: CP2K is an open source electronic structure and molecular dynamics software
package to perform atomistic simulations of solid-state, liquid, molecular, and
biological systems. It is especially aimed at massively parallel and linear-scaling
electronic structure methods and state-of-theart ab initio molecular dynamics
simulations. Excellent performance for electronic structure calculations is achieved
using novel algorithms implemented for modern high-performance computing systems.
This review revisits the main capabilities of CP2K to perform efficient and accurate
electronic structure simulations. The emphasis is put on density functional theory
and multiple post–Hartree–Fock methods using the Gaussian and plane wave approach
and its augmented all-electron extension.
article_number: '194103'
author:
- first_name: Thomas
full_name: Kühne, Thomas
id: '49079'
last_name: Kühne
- first_name: Marcella
full_name: Iannuzzi, Marcella
last_name: Iannuzzi
- first_name: Mauro Del
full_name: Ben, Mauro Del
last_name: Ben
- first_name: Vladimir V.
full_name: Rybkin, Vladimir V.
last_name: Rybkin
- first_name: Patrick
full_name: Seewald, Patrick
last_name: Seewald
- first_name: Frederick
full_name: Stein, Frederick
last_name: Stein
- first_name: Teodoro
full_name: Laino, Teodoro
last_name: Laino
- first_name: Rustam Z.
full_name: Khaliullin, Rustam Z.
last_name: Khaliullin
- first_name: Ole
full_name: Schütt, Ole
last_name: Schütt
- first_name: Florian
full_name: Schiffmann, Florian
last_name: Schiffmann
- first_name: Dorothea
full_name: Golze, Dorothea
last_name: Golze
- first_name: Jan
full_name: Wilhelm, Jan
last_name: Wilhelm
- first_name: Sergey
full_name: Chulkov, Sergey
last_name: Chulkov
- first_name: Mohammad Hossein Bani-Hashemian
full_name: Mohammad Hossein Bani-Hashemian, Mohammad Hossein Bani-Hashemian
last_name: Mohammad Hossein Bani-Hashemian
- first_name: Valéry
full_name: Weber, Valéry
last_name: Weber
- first_name: Urban
full_name: Borstnik, Urban
last_name: Borstnik
- first_name: Mathieu
full_name: Taillefumier, Mathieu
last_name: Taillefumier
- first_name: Alice Shoshana
full_name: Jakobovits, Alice Shoshana
last_name: Jakobovits
- first_name: Alfio
full_name: Lazzaro, Alfio
last_name: Lazzaro
- first_name: Hans
full_name: Pabst, Hans
last_name: Pabst
- first_name: Tiziano
full_name: Müller, Tiziano
last_name: Müller
- first_name: Robert
full_name: Schade, Robert
id: '75963'
last_name: Schade
orcid: 0000-0002-6268-539
- first_name: Manuel
full_name: Guidon, Manuel
last_name: Guidon
- first_name: Samuel
full_name: Andermatt, Samuel
last_name: Andermatt
- first_name: Nico
full_name: Holmberg, Nico
last_name: Holmberg
- first_name: Gregory K.
full_name: Schenter, Gregory K.
last_name: Schenter
- first_name: Anna
full_name: Hehn, Anna
last_name: Hehn
- first_name: Augustin
full_name: Bussy, Augustin
last_name: Bussy
- first_name: Fabian
full_name: Belleflamme, Fabian
last_name: Belleflamme
- first_name: Gloria
full_name: Tabacchi, Gloria
last_name: Tabacchi
- first_name: Andreas
full_name: Glöß, Andreas
last_name: Glöß
- first_name: Michael
full_name: Lass, Michael
id: '24135'
last_name: Lass
orcid: 0000-0002-5708-7632
- first_name: Iain
full_name: Bethune, Iain
last_name: Bethune
- first_name: Christopher J.
full_name: Mundy, Christopher J.
last_name: Mundy
- first_name: Christian
full_name: Plessl, Christian
id: '16153'
last_name: Plessl
orcid: 0000-0001-5728-9982
- first_name: Matt
full_name: Watkins, Matt
last_name: Watkins
- first_name: Joost
full_name: VandeVondele, Joost
last_name: VandeVondele
- first_name: Matthias
full_name: Krack, Matthias
last_name: Krack
- first_name: Jürg
full_name: Hutter, Jürg
last_name: Hutter
citation:
ama: 'Kühne T, Iannuzzi M, Ben MD, et al. CP2K: An electronic structure and molecular
dynamics software package - Quickstep: Efficient and accurate electronic structure
calculations. The Journal of Chemical Physics. 2020;152(19). doi:10.1063/5.0007045'
apa: 'Kühne, T., Iannuzzi, M., Ben, M. D., Rybkin, V. V., Seewald, P., Stein, F.,
Laino, T., Khaliullin, R. Z., Schütt, O., Schiffmann, F., Golze, D., Wilhelm,
J., Chulkov, S., Mohammad Hossein Bani-Hashemian, M. H. B.-H., Weber, V., Borstnik,
U., Taillefumier, M., Jakobovits, A. S., Lazzaro, A., … Hutter, J. (2020). CP2K:
An electronic structure and molecular dynamics software package - Quickstep: Efficient
and accurate electronic structure calculations. The Journal of Chemical Physics,
152(19), Article 194103. https://doi.org/10.1063/5.0007045'
bibtex: '@article{Kühne_Iannuzzi_Ben_Rybkin_Seewald_Stein_Laino_Khaliullin_Schütt_Schiffmann_et
al._2020, title={CP2K: An electronic structure and molecular dynamics software
package - Quickstep: Efficient and accurate electronic structure calculations},
volume={152}, DOI={10.1063/5.0007045},
number={19194103}, journal={The Journal of Chemical Physics}, author={Kühne, Thomas
and Iannuzzi, Marcella and Ben, Mauro Del and Rybkin, Vladimir V. and Seewald,
Patrick and Stein, Frederick and Laino, Teodoro and Khaliullin, Rustam Z. and
Schütt, Ole and Schiffmann, Florian and et al.}, year={2020} }'
chicago: 'Kühne, Thomas, Marcella Iannuzzi, Mauro Del Ben, Vladimir V. Rybkin, Patrick
Seewald, Frederick Stein, Teodoro Laino, et al. “CP2K: An Electronic Structure
and Molecular Dynamics Software Package - Quickstep: Efficient and Accurate Electronic
Structure Calculations.” The Journal of Chemical Physics 152, no. 19 (2020).
https://doi.org/10.1063/5.0007045.'
ieee: 'T. Kühne et al., “CP2K: An electronic structure and molecular dynamics
software package - Quickstep: Efficient and accurate electronic structure calculations,”
The Journal of Chemical Physics, vol. 152, no. 19, Art. no. 194103, 2020,
doi: 10.1063/5.0007045.'
mla: 'Kühne, Thomas, et al. “CP2K: An Electronic Structure and Molecular Dynamics
Software Package - Quickstep: Efficient and Accurate Electronic Structure Calculations.”
The Journal of Chemical Physics, vol. 152, no. 19, 194103, 2020, doi:10.1063/5.0007045.'
short: T. Kühne, M. Iannuzzi, M.D. Ben, V.V. Rybkin, P. Seewald, F. Stein, T. Laino,
R.Z. Khaliullin, O. Schütt, F. Schiffmann, D. Golze, J. Wilhelm, S. Chulkov, M.H.B.-H.
Mohammad Hossein Bani-Hashemian, V. Weber, U. Borstnik, M. Taillefumier, A.S.
Jakobovits, A. Lazzaro, H. Pabst, T. Müller, R. Schade, M. Guidon, S. Andermatt,
N. Holmberg, G.K. Schenter, A. Hehn, A. Bussy, F. Belleflamme, G. Tabacchi, A.
Glöß, M. Lass, I. Bethune, C.J. Mundy, C. Plessl, M. Watkins, J. VandeVondele,
M. Krack, J. Hutter, The Journal of Chemical Physics 152 (2020).
date_created: 2020-03-10T15:12:31Z
date_updated: 2023-08-02T14:56:21Z
ddc:
- '540'
department:
- _id: '27'
- _id: '518'
- _id: '304'
doi: 10.1063/5.0007045
external_id:
arxiv:
- '2003.03868'
file:
- access_level: closed
content_type: application/pdf
creator: lass
date_created: 2020-05-25T15:21:56Z
date_updated: 2020-05-25T15:21:56Z
file_id: '17061'
file_name: 5.0007045.pdf
file_size: 4887650
relation: main_file
success: 1
file_date_updated: 2020-05-25T15:21:56Z
has_accepted_license: '1'
intvolume: ' 152'
issue: '19'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://aip.scitation.org/doi/pdf/10.1063/5.0007045?download=true
oa: '1'
project:
- _id: '52'
name: Computing Resources Provided by the Paderborn Center for Parallel Computing
- _id: '32'
grant_number: PL 595/2-1 / 320898746
name: Performance and Efficiency in HPC with Custom Computing
- _id: '52'
name: 'PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing'
publication: The Journal of Chemical Physics
publication_status: published
quality_controlled: '1'
status: public
title: 'CP2K: An electronic structure and molecular dynamics software package - Quickstep:
Efficient and accurate electronic structure calculations'
type: journal_article
user_id: '75963'
volume: 152
year: '2020'
...
---
_id: '16898'
abstract:
- lang: eng
text: "Electronic structure calculations based on density-functional theory (DFT)\r\nrepresent
a significant part of today's HPC workloads and pose high demands on\r\nhigh-performance
computing resources. To perform these quantum-mechanical DFT\r\ncalculations on
complex large-scale systems, so-called linear scaling methods\r\ninstead of conventional
cubic scaling methods are required. In this work, we\r\ntake up the idea of the
submatrix method and apply it to the DFT computations\r\nin the software package
CP2K. For that purpose, we transform the underlying\r\nnumeric operations on distributed,
large, sparse matrices into computations on\r\nlocal, much smaller and nearly
dense matrices. This allows us to exploit the\r\nfull floating-point performance
of modern CPUs and to make use of dedicated\r\naccelerator hardware, where performance
has been limited by memory bandwidth\r\nbefore. We demonstrate both functionality
and performance of our implementation\r\nand show how it can be accelerated with
GPUs and FPGAs."
author:
- first_name: Michael
full_name: Lass, Michael
id: '24135'
last_name: Lass
orcid: 0000-0002-5708-7632
- first_name: Robert
full_name: Schade, Robert
id: '75963'
last_name: Schade
orcid: 0000-0002-6268-539
- first_name: Thomas
full_name: Kühne, Thomas
id: '49079'
last_name: Kühne
- first_name: Christian
full_name: Plessl, Christian
id: '16153'
last_name: Plessl
orcid: 0000-0001-5728-9982
citation:
ama: 'Lass M, Schade R, Kühne T, Plessl C. A Submatrix-Based Method for Approximate
Matrix Function Evaluation in the Quantum Chemistry Code CP2K. In: Proc. International
Conference for High Performance Computing, Networking, Storage and Analysis (SC).
IEEE Computer Society; 2020:1127-1140. doi:10.1109/SC41405.2020.00084'
apa: Lass, M., Schade, R., Kühne, T., & Plessl, C. (2020). A Submatrix-Based
Method for Approximate Matrix Function Evaluation in the Quantum Chemistry Code
CP2K. Proc. International Conference for High Performance Computing, Networking,
Storage and Analysis (SC), 1127–1140. https://doi.org/10.1109/SC41405.2020.00084
bibtex: '@inproceedings{Lass_Schade_Kühne_Plessl_2020, place={Los Alamitos, CA,
USA}, title={A Submatrix-Based Method for Approximate Matrix Function Evaluation
in the Quantum Chemistry Code CP2K}, DOI={10.1109/SC41405.2020.00084},
booktitle={Proc. International Conference for High Performance Computing, Networking,
Storage and Analysis (SC)}, publisher={IEEE Computer Society}, author={Lass, Michael
and Schade, Robert and Kühne, Thomas and Plessl, Christian}, year={2020}, pages={1127–1140}
}'
chicago: 'Lass, Michael, Robert Schade, Thomas Kühne, and Christian Plessl. “A Submatrix-Based
Method for Approximate Matrix Function Evaluation in the Quantum Chemistry Code
CP2K.” In Proc. International Conference for High Performance Computing, Networking,
Storage and Analysis (SC), 1127–40. Los Alamitos, CA, USA: IEEE Computer Society,
2020. https://doi.org/10.1109/SC41405.2020.00084.'
ieee: 'M. Lass, R. Schade, T. Kühne, and C. Plessl, “A Submatrix-Based Method for
Approximate Matrix Function Evaluation in the Quantum Chemistry Code CP2K,” in
Proc. International Conference for High Performance Computing, Networking,
Storage and Analysis (SC), Atlanta, GA, US, 2020, pp. 1127–1140, doi: 10.1109/SC41405.2020.00084.'
mla: Lass, Michael, et al. “A Submatrix-Based Method for Approximate Matrix Function
Evaluation in the Quantum Chemistry Code CP2K.” Proc. International Conference
for High Performance Computing, Networking, Storage and Analysis (SC), IEEE
Computer Society, 2020, pp. 1127–40, doi:10.1109/SC41405.2020.00084.
short: 'M. Lass, R. Schade, T. Kühne, C. Plessl, in: Proc. International Conference
for High Performance Computing, Networking, Storage and Analysis (SC), IEEE Computer
Society, Los Alamitos, CA, USA, 2020, pp. 1127–1140.'
conference:
location: Atlanta, GA, US
name: 'SC20: International Conference for High Performance Computing, Networking,
Storage and Analysis (SC)'
date_created: 2020-04-28T14:44:21Z
date_updated: 2023-08-02T14:55:59Z
department:
- _id: '27'
- _id: '518'
- _id: '304'
doi: 10.1109/SC41405.2020.00084
external_id:
arxiv:
- '2004.10811'
language:
- iso: eng
main_file_link:
- url: https://ieeexplore.ieee.org/document/9355245
page: 1127-1140
place: Los Alamitos, CA, USA
project:
- _id: '52'
name: Computing Resources Provided by the Paderborn Center for Parallel Computing
- _id: '32'
grant_number: PL 595/2-1 / 320898746
name: Performance and Efficiency in HPC with Custom Computing
- _id: '52'
name: 'PC2: Computing Resources Provided by the Paderborn Center for Parallel Computing'
publication: Proc. International Conference for High Performance Computing, Networking,
Storage and Analysis (SC)
publisher: IEEE Computer Society
quality_controlled: '1'
status: public
title: A Submatrix-Based Method for Approximate Matrix Function Evaluation in the
Quantum Chemistry Code CP2K
type: conference
user_id: '75963'
year: '2020'
...
---
_id: '21632'
abstract:
- lang: eng
text: FPGAs have found increasing adoption in data center applications since a new
generation of high-level tools have become available which noticeably reduce development
time for FPGA accelerators and still provide high-quality results. There is, however,
no high-level benchmark suite available, which specifically enables a comparison
of FPGA architectures, programming tools, and libraries for HPC applications.
To fill this gap, we have developed an OpenCL-based open-source implementation
of the HPCC benchmark suite for Xilinx and Intel FPGAs. This benchmark can serve
to analyze the current capabilities of FPGA devices, cards, and development tool
flows, track progress over time, and point out specific difficulties for FPGA
acceleration in the HPC domain. Additionally, the benchmark documents proven performance
optimization patterns. We will continue optimizing and porting the benchmark for
new generations of FPGAs and design tools and encourage active participation to
create a valuable tool for the community. To fill this gap, we have developed
an OpenCL-based open-source implementation of the HPCC benchmark suite for Xilinx
and Intel FPGAs. This benchmark can serve to analyze the current capabilities
of FPGA devices, cards, and development tool flows, track progress over time,
and point out specific difficulties for FPGA acceleration in the HPC domain. Additionally,
the benchmark documents proven performance optimization patterns. We will continue
optimizing and porting the benchmark for new generations of FPGAs and design tools
and encourage active participation to create a valuable tool for the community.
author:
- first_name: Marius
full_name: Meyer, Marius
id: '40778'
last_name: Meyer
- first_name: Tobias
full_name: Kenter, Tobias
id: '3145'
last_name: Kenter
- first_name: Christian
full_name: Plessl, Christian
id: '16153'
last_name: Plessl
orcid: 0000-0001-5728-9982
citation:
ama: 'Meyer M, Kenter T, Plessl C. Evaluating FPGA Accelerator Performance with
a Parameterized OpenCL Adaptation of Selected Benchmarks of the HPCChallenge Benchmark
Suite. In: 2020 IEEE/ACM International Workshop on Heterogeneous High-Performance
Reconfigurable Computing (H2RC). ; 2020. doi:10.1109/h2rc51942.2020.00007'
apa: Meyer, M., Kenter, T., & Plessl, C. (2020). Evaluating FPGA Accelerator
Performance with a Parameterized OpenCL Adaptation of Selected Benchmarks of the
HPCChallenge Benchmark Suite. 2020 IEEE/ACM International Workshop on Heterogeneous
High-Performance Reconfigurable Computing (H2RC). https://doi.org/10.1109/h2rc51942.2020.00007
bibtex: '@inproceedings{Meyer_Kenter_Plessl_2020, title={Evaluating FPGA Accelerator
Performance with a Parameterized OpenCL Adaptation of Selected Benchmarks of the
HPCChallenge Benchmark Suite}, DOI={10.1109/h2rc51942.2020.00007},
booktitle={2020 IEEE/ACM International Workshop on Heterogeneous High-performance
Reconfigurable Computing (H2RC)}, author={Meyer, Marius and Kenter, Tobias and
Plessl, Christian}, year={2020} }'
chicago: Meyer, Marius, Tobias Kenter, and Christian Plessl. “Evaluating FPGA Accelerator
Performance with a Parameterized OpenCL Adaptation of Selected Benchmarks of the
HPCChallenge Benchmark Suite.” In 2020 IEEE/ACM International Workshop on Heterogeneous
High-Performance Reconfigurable Computing (H2RC), 2020. https://doi.org/10.1109/h2rc51942.2020.00007.
ieee: 'M. Meyer, T. Kenter, and C. Plessl, “Evaluating FPGA Accelerator Performance
with a Parameterized OpenCL Adaptation of Selected Benchmarks of the HPCChallenge
Benchmark Suite,” 2020, doi: 10.1109/h2rc51942.2020.00007.'
mla: Meyer, Marius, et al. “Evaluating FPGA Accelerator Performance with a Parameterized
OpenCL Adaptation of Selected Benchmarks of the HPCChallenge Benchmark Suite.”
2020 IEEE/ACM International Workshop on Heterogeneous High-Performance Reconfigurable
Computing (H2RC), 2020, doi:10.1109/h2rc51942.2020.00007.
short: 'M. Meyer, T. Kenter, C. Plessl, in: 2020 IEEE/ACM International Workshop
on Heterogeneous High-Performance Reconfigurable Computing (H2RC), 2020.'
date_created: 2021-04-16T10:17:22Z
date_updated: 2023-09-26T11:42:53Z
department:
- _id: '27'
- _id: '518'
doi: 10.1109/h2rc51942.2020.00007
keyword:
- FPGA
- OpenCL
- High Level Synthesis
- HPC benchmarking
language:
- iso: eng
main_file_link:
- url: https://ieeexplore.ieee.org/document/9306963
project:
- _id: '52'
name: Computing Resources Provided by the Paderborn Center for Parallel Computing
publication: 2020 IEEE/ACM International Workshop on Heterogeneous High-performance
Reconfigurable Computing (H2RC)
publication_identifier:
isbn:
- '9781665415927'
publication_status: published
quality_controlled: '1'
related_material:
link:
- description: Official repository of the benchmark suite on GitHub
relation: supplementary_material
url: https://github.com/pc2/HPCC_FPGA
status: public
title: Evaluating FPGA Accelerator Performance with a Parameterized OpenCL Adaptation
of Selected Benchmarks of the HPCChallenge Benchmark Suite
type: conference
user_id: '15278'
year: '2020'
...
---
_id: '12878'
abstract:
- lang: eng
text: In scientific computing, the acceleration of atomistic computer simulations
by means of custom hardware is finding ever-growing application. A major limitation,
however, is that the high efficiency in terms of performance and low power consumption
entails the massive usage of low precision computing units. Here, based on the
approximate computing paradigm, we present an algorithmic method to compensate
for numerical inaccuracies due to low accuracy arithmetic operations rigorously,
yet still obtaining exact expectation values using a properly modified Langevin-type
equation.
article_number: '39'
author:
- first_name: Varadarajan
full_name: Rengaraj, Varadarajan
last_name: Rengaraj
- first_name: Michael
full_name: Lass, Michael
id: '24135'
last_name: Lass
orcid: 0000-0002-5708-7632
- first_name: Christian
full_name: Plessl, Christian
id: '16153'
last_name: Plessl
orcid: 0000-0001-5728-9982
- first_name: Thomas
full_name: Kühne, Thomas
id: '49079'
last_name: Kühne
citation:
ama: Rengaraj V, Lass M, Plessl C, Kühne T. Accurate Sampling with Noisy Forces
from Approximate Computing. Computation. 2020;8(2). doi:10.3390/computation8020039
apa: Rengaraj, V., Lass, M., Plessl, C., & Kühne, T. (2020). Accurate Sampling
with Noisy Forces from Approximate Computing. Computation, 8(2),
Article 39. https://doi.org/10.3390/computation8020039
bibtex: '@article{Rengaraj_Lass_Plessl_Kühne_2020, title={Accurate Sampling with
Noisy Forces from Approximate Computing}, volume={8}, DOI={10.3390/computation8020039},
number={239}, journal={Computation}, publisher={MDPI}, author={Rengaraj, Varadarajan
and Lass, Michael and Plessl, Christian and Kühne, Thomas}, year={2020} }'
chicago: Rengaraj, Varadarajan, Michael Lass, Christian Plessl, and Thomas Kühne.
“Accurate Sampling with Noisy Forces from Approximate Computing.” Computation
8, no. 2 (2020). https://doi.org/10.3390/computation8020039.
ieee: 'V. Rengaraj, M. Lass, C. Plessl, and T. Kühne, “Accurate Sampling with Noisy
Forces from Approximate Computing,” Computation, vol. 8, no. 2, Art. no.
39, 2020, doi: 10.3390/computation8020039.'
mla: Rengaraj, Varadarajan, et al. “Accurate Sampling with Noisy Forces from Approximate
Computing.” Computation, vol. 8, no. 2, 39, MDPI, 2020, doi:10.3390/computation8020039.
short: V. Rengaraj, M. Lass, C. Plessl, T. Kühne, Computation 8 (2020).
date_created: 2019-07-23T12:03:07Z
date_updated: 2023-09-26T11:43:52Z
department:
- _id: '27'
- _id: '518'
- _id: '304'
doi: 10.3390/computation8020039
external_id:
arxiv:
- '1907.08497'
intvolume: ' 8'
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.mdpi.com/2079-3197/8/2/39/pdf
oa: '1'
project:
- _id: '52'
name: Computing Resources Provided by the Paderborn Center for Parallel Computing
- _id: '32'
grant_number: PL 595/2-1 / 320898746
name: Performance and Efficiency in HPC with Custom Computing
publication: Computation
publisher: MDPI
quality_controlled: '1'
status: public
title: Accurate Sampling with Noisy Forces from Approximate Computing
type: journal_article
user_id: '15278'
volume: 8
year: '2020'
...
---
_id: '7689'
article_type: original
author:
- first_name: Heinrich
full_name: Riebler, Heinrich
id: '8961'
last_name: Riebler
- first_name: Gavin Francis
full_name: Vaz, Gavin Francis
id: '30332'
last_name: Vaz
- first_name: Tobias
full_name: Kenter, Tobias
id: '3145'
last_name: Kenter
- first_name: Christian
full_name: Plessl, Christian
id: '16153'
last_name: Plessl
orcid: 0000-0001-5728-9982
citation:
ama: Riebler H, Vaz GF, Kenter T, Plessl C. Transparent Acceleration for Heterogeneous
Platforms with Compilation to OpenCL. ACM Trans Archit Code Optim (TACO).
2019;16(2):14:1–14:26. doi:10.1145/3319423
apa: Riebler, H., Vaz, G. F., Kenter, T., & Plessl, C. (2019). Transparent Acceleration
for Heterogeneous Platforms with Compilation to OpenCL. ACM Trans. Archit.
Code Optim. (TACO), 16(2), 14:1–14:26. https://doi.org/10.1145/3319423
bibtex: '@article{Riebler_Vaz_Kenter_Plessl_2019, title={Transparent Acceleration
for Heterogeneous Platforms with Compilation to OpenCL}, volume={16}, DOI={10.1145/3319423}, number={2}, journal={ACM
Trans. Archit. Code Optim. (TACO)}, publisher={ACM}, author={Riebler, Heinrich
and Vaz, Gavin Francis and Kenter, Tobias and Plessl, Christian}, year={2019},
pages={14:1–14:26} }'
chicago: 'Riebler, Heinrich, Gavin Francis Vaz, Tobias Kenter, and Christian Plessl.
“Transparent Acceleration for Heterogeneous Platforms with Compilation to OpenCL.”
ACM Trans. Archit. Code Optim. (TACO) 16, no. 2 (2019): 14:1–14:26. https://doi.org/10.1145/3319423.'
ieee: H. Riebler, G. F. Vaz, T. Kenter, and C. Plessl, “Transparent Acceleration
for Heterogeneous Platforms with Compilation to OpenCL,” ACM Trans. Archit.
Code Optim. (TACO), vol. 16, no. 2, pp. 14:1–14:26, 2019.
mla: Riebler, Heinrich, et al. “Transparent Acceleration for Heterogeneous Platforms
with Compilation to OpenCL.” ACM Trans. Archit. Code Optim. (TACO), vol.
16, no. 2, ACM, 2019, pp. 14:1–14:26, doi:10.1145/3319423.
short: H. Riebler, G.F. Vaz, T. Kenter, C. Plessl, ACM Trans. Archit. Code Optim.
(TACO) 16 (2019) 14:1–14:26.
date_created: 2019-02-13T15:01:43Z
date_updated: 2022-01-06T07:03:44Z
ddc:
- '000'
department:
- _id: '27'
- _id: '518'
doi: 10.1145/3319423
file:
- access_level: closed
content_type: application/pdf
creator: deffel
date_created: 2019-02-13T14:59:07Z
date_updated: 2019-02-13T14:59:07Z
file_id: '7695'
file_name: htrop19_taco.pdf
file_size: 872822
relation: main_file
file_date_updated: 2019-02-13T14:59:07Z
has_accepted_license: '1'
intvolume: ' 16'
issue: '2'
keyword:
- htrop
language:
- iso: eng
page: 14:1–14:26
project:
- _id: '1'
name: SFB 901
- _id: '4'
name: SFB 901 - Project Area C
- _id: '14'
name: SFB 901 - Subproject C2
publication: ACM Trans. Archit. Code Optim. (TACO)
publication_status: published
publisher: ACM
quality_controlled: '1'
status: public
title: Transparent Acceleration for Heterogeneous Platforms with Compilation to OpenCL
type: journal_article
user_id: '16153'
volume: 16
year: '2019'
...
---
_id: '15478'
abstract:
- lang: eng
text: Stratix 10 FPGA cards have a good potential for the acceleration of HPC workloads
since the Stratix 10 product line introduces devices with a large number of DSP
and memory blocks. The high level synthesis of OpenCL codes can play a fundamental
role for FPGAs in HPC, because it allows to implement different designs with lower
development effort compared to hand optimized HDL. However, Stratix 10 cards are
still hard to fully exploit using the Intel FPGA SDK for OpenCL. The implementation
of designs with thousands of concurrent arithmetic operations often suffers from
place and route problems that limit the maximum frequency or entirely prevent
a successful synthesis. In order to overcome these issues for the implementation
of the matrix multiplication, we formulate Cannon's matrix multiplication algorithm
with regard to its efficient synthesis within the FPGA logic. We obtain a two-level
block algorithm, where the lower level sub-matrices are multiplied using our Cannon's
algorithm implementation. Following this design approach with multiple compute
units, we are able to get maximum frequencies close to and above 300 MHz with
high utilization of DSP and memory blocks. This allows for performance results
above 1 TeraFLOPS.
author:
- first_name: Paolo
full_name: Gorlani, Paolo
id: '72045'
last_name: Gorlani
- first_name: Tobias
full_name: Kenter, Tobias
id: '3145'
last_name: Kenter
- first_name: Christian
full_name: Plessl, Christian
id: '16153'
last_name: Plessl
orcid: 0000-0001-5728-9982
citation:
ama: 'Gorlani P, Kenter T, Plessl C. OpenCL Implementation of Cannon’s Matrix Multiplication
Algorithm on Intel Stratix 10 FPGAs. In: Proceedings of the International Conference
on Field-Programmable Technology (FPT). IEEE; 2019. doi:10.1109/ICFPT47387.2019.00020'
apa: Gorlani, P., Kenter, T., & Plessl, C. (2019). OpenCL Implementation of
Cannon’s Matrix Multiplication Algorithm on Intel Stratix 10 FPGAs. In Proceedings
of the International Conference on Field-Programmable Technology (FPT). IEEE.
https://doi.org/10.1109/ICFPT47387.2019.00020
bibtex: '@inproceedings{Gorlani_Kenter_Plessl_2019, title={OpenCL Implementation
of Cannon’s Matrix Multiplication Algorithm on Intel Stratix 10 FPGAs}, DOI={10.1109/ICFPT47387.2019.00020},
booktitle={Proceedings of the International Conference on Field-Programmable Technology
(FPT)}, publisher={IEEE}, author={Gorlani, Paolo and Kenter, Tobias and Plessl,
Christian}, year={2019} }'
chicago: Gorlani, Paolo, Tobias Kenter, and Christian Plessl. “OpenCL Implementation
of Cannon’s Matrix Multiplication Algorithm on Intel Stratix 10 FPGAs.” In Proceedings
of the International Conference on Field-Programmable Technology (FPT). IEEE,
2019. https://doi.org/10.1109/ICFPT47387.2019.00020.
ieee: P. Gorlani, T. Kenter, and C. Plessl, “OpenCL Implementation of Cannon’s Matrix
Multiplication Algorithm on Intel Stratix 10 FPGAs,” in Proceedings of the
International Conference on Field-Programmable Technology (FPT), 2019.
mla: Gorlani, Paolo, et al. “OpenCL Implementation of Cannon’s Matrix Multiplication
Algorithm on Intel Stratix 10 FPGAs.” Proceedings of the International Conference
on Field-Programmable Technology (FPT), IEEE, 2019, doi:10.1109/ICFPT47387.2019.00020.
short: 'P. Gorlani, T. Kenter, C. Plessl, in: Proceedings of the International Conference
on Field-Programmable Technology (FPT), IEEE, 2019.'
conference:
name: International Conference on Field-Programmable Technology (FPT)
date_created: 2020-01-09T12:54:48Z
date_updated: 2022-01-06T06:52:26Z
ddc:
- '004'
department:
- _id: '27'
- _id: '518'
doi: 10.1109/ICFPT47387.2019.00020
file:
- access_level: closed
content_type: application/pdf
creator: plessl
date_created: 2020-01-09T12:53:57Z
date_updated: 2020-01-09T12:53:57Z
file_id: '15479'
file_name: gorlani19_fpt.pdf
file_size: 250559
relation: main_file
success: 1
file_date_updated: 2020-01-09T12:53:57Z
has_accepted_license: '1'
language:
- iso: eng
project:
- _id: '33'
grant_number: 01|H16005
name: HighPerMeshes
- _id: '32'
grant_number: PL 595/2-1
name: Performance and Efficiency in HPC with Custom Computing
publication: Proceedings of the International Conference on Field-Programmable Technology
(FPT)
publisher: IEEE
quality_controlled: '1'
status: public
title: OpenCL Implementation of Cannon's Matrix Multiplication Algorithm on Intel
Stratix 10 FPGAs
type: conference
user_id: '3145'
year: '2019'
...
---
_id: '14849'
author:
- first_name: Gavin Francis
full_name: Vaz, Gavin Francis
id: '30332'
last_name: Vaz
citation:
ama: Vaz GF. Using Just-in-Time Code Generation to Transparently Accelerate Applications
in Heterogeneous Systems. Universität Paderborn; 2019.
apa: Vaz, G. F. (2019). Using Just-in-Time Code Generation to Transparently Accelerate
Applications in Heterogeneous Systems. Universität Paderborn.
bibtex: '@book{Vaz_2019, title={Using Just-in-Time Code Generation to Transparently
Accelerate Applications in Heterogeneous Systems}, publisher={Universität Paderborn},
author={Vaz, Gavin Francis}, year={2019} }'
chicago: Vaz, Gavin Francis. Using Just-in-Time Code Generation to Transparently
Accelerate Applications in Heterogeneous Systems. Universität Paderborn, 2019.
ieee: G. F. Vaz, Using Just-in-Time Code Generation to Transparently Accelerate
Applications in Heterogeneous Systems. Universität Paderborn, 2019.
mla: Vaz, Gavin Francis. Using Just-in-Time Code Generation to Transparently
Accelerate Applications in Heterogeneous Systems. Universität Paderborn, 2019.
short: G.F. Vaz, Using Just-in-Time Code Generation to Transparently Accelerate
Applications in Heterogeneous Systems, Universität Paderborn, 2019.
date_created: 2019-11-07T14:13:54Z
date_updated: 2022-01-06T06:52:08Z
ddc:
- '040'
department:
- _id: '518'
file:
- access_level: closed
content_type: application/pdf
creator: florida
date_created: 2019-11-07T14:13:14Z
date_updated: 2019-11-07T14:13:14Z
file_id: '14850'
file_name: PhDThesis_GavinVaz_2019-07-11.pdf
file_size: 1462659
relation: main_file
success: 1
file_date_updated: 2019-11-07T14:13:14Z
has_accepted_license: '1'
language:
- iso: eng
project:
- _id: '1'
name: SFB 901
- _id: '4'
name: SFB 901 - Project Area C
- _id: '14'
name: SFB 901 - Subproject C2
publisher: Universität Paderborn
status: public
supervisor:
- first_name: Christian
full_name: Plessl, Christian
id: '16153'
last_name: Plessl
orcid: 0000-0001-5728-9982
title: Using Just-in-Time Code Generation to Transparently Accelerate Applications
in Heterogeneous Systems
type: dissertation
user_id: '477'
year: '2019'
...
---
_id: '21'
abstract:
- lang: eng
text: "We address the general mathematical problem of computing the inverse p-th\r\nroot
of a given matrix in an efficient way. A new method to construct iteration\r\nfunctions
that allow calculating arbitrary p-th roots and their inverses of\r\nsymmetric
positive definite matrices is presented. We show that the order of\r\nconvergence
is at least quadratic and that adaptively adjusting a parameter q\r\nalways leads
to an even faster convergence. In this way, a better performance\r\nthan with
previously known iteration schemes is achieved. The efficiency of the\r\niterative
functions is demonstrated for various matrices with different\r\ndensities, condition
numbers and spectral radii."
author:
- first_name: Dorothee
full_name: Richters, Dorothee
last_name: Richters
- first_name: Michael
full_name: Lass, Michael
id: '24135'
last_name: Lass
orcid: 0000-0002-5708-7632
- first_name: Andrea
full_name: Walther, Andrea
last_name: Walther
- first_name: Christian
full_name: Plessl, Christian
id: '16153'
last_name: Plessl
orcid: 0000-0001-5728-9982
- first_name: Thomas
full_name: Kühne, Thomas
id: '49079'
last_name: Kühne
citation:
ama: Richters D, Lass M, Walther A, Plessl C, Kühne T. A General Algorithm to Calculate
the Inverse Principal p-th Root of Symmetric Positive Definite Matrices. Communications
in Computational Physics. 2019;25(2):564-585. doi:10.4208/cicp.OA-2018-0053
apa: Richters, D., Lass, M., Walther, A., Plessl, C., & Kühne, T. (2019). A
General Algorithm to Calculate the Inverse Principal p-th Root of Symmetric Positive
Definite Matrices. Communications in Computational Physics, 25(2),
564–585. https://doi.org/10.4208/cicp.OA-2018-0053
bibtex: '@article{Richters_Lass_Walther_Plessl_Kühne_2019, title={A General Algorithm
to Calculate the Inverse Principal p-th Root of Symmetric Positive Definite Matrices},
volume={25}, DOI={10.4208/cicp.OA-2018-0053},
number={2}, journal={Communications in Computational Physics}, publisher={Global
Science Press}, author={Richters, Dorothee and Lass, Michael and Walther, Andrea
and Plessl, Christian and Kühne, Thomas}, year={2019}, pages={564–585} }'
chicago: 'Richters, Dorothee, Michael Lass, Andrea Walther, Christian Plessl, and
Thomas Kühne. “A General Algorithm to Calculate the Inverse Principal P-Th Root
of Symmetric Positive Definite Matrices.” Communications in Computational Physics
25, no. 2 (2019): 564–85. https://doi.org/10.4208/cicp.OA-2018-0053.'
ieee: 'D. Richters, M. Lass, A. Walther, C. Plessl, and T. Kühne, “A General Algorithm
to Calculate the Inverse Principal p-th Root of Symmetric Positive Definite Matrices,”
Communications in Computational Physics, vol. 25, no. 2, pp. 564–585, 2019,
doi: 10.4208/cicp.OA-2018-0053.'
mla: Richters, Dorothee, et al. “A General Algorithm to Calculate the Inverse Principal
P-Th Root of Symmetric Positive Definite Matrices.” Communications in Computational
Physics, vol. 25, no. 2, Global Science Press, 2019, pp. 564–85, doi:10.4208/cicp.OA-2018-0053.
short: D. Richters, M. Lass, A. Walther, C. Plessl, T. Kühne, Communications in
Computational Physics 25 (2019) 564–585.
date_created: 2017-07-25T14:48:26Z
date_updated: 2023-09-26T11:45:02Z
department:
- _id: '27'
- _id: '518'
- _id: '304'
- _id: '104'
doi: 10.4208/cicp.OA-2018-0053
external_id:
arxiv:
- '1703.02456'
intvolume: ' 25'
issue: '2'
language:
- iso: eng
page: 564-585
project:
- _id: '32'
grant_number: PL 595/2-1 / 320898746
name: Performance and Efficiency in HPC with Custom Computing
- _id: '52'
name: Computing Resources Provided by the Paderborn Center for Parallel Computing
publication: Communications in Computational Physics
publisher: Global Science Press
quality_controlled: '1'
status: public
title: A General Algorithm to Calculate the Inverse Principal p-th Root of Symmetric
Positive Definite Matrices
type: journal_article
user_id: '15278'
volume: 25
year: '2019'
...
---
_id: '12871'
author:
- first_name: Marco
full_name: Platzner, Marco
id: '398'
last_name: Platzner
- first_name: Christian
full_name: Plessl, Christian
id: '16153'
last_name: Plessl
orcid: 0000-0001-5728-9982
citation:
ama: Platzner M, Plessl C. FPGAs im Rechenzentrum. Informatik Spektrum. Published
online 2019. doi:10.1007/s00287-019-01187-w
apa: Platzner, M., & Plessl, C. (2019). FPGAs im Rechenzentrum. Informatik
Spektrum. https://doi.org/10.1007/s00287-019-01187-w
bibtex: '@article{Platzner_Plessl_2019, title={FPGAs im Rechenzentrum}, DOI={10.1007/s00287-019-01187-w},
journal={Informatik Spektrum}, author={Platzner, Marco and Plessl, Christian},
year={2019} }'
chicago: Platzner, Marco, and Christian Plessl. “FPGAs im Rechenzentrum.” Informatik
Spektrum, 2019. https://doi.org/10.1007/s00287-019-01187-w.
ieee: 'M. Platzner and C. Plessl, “FPGAs im Rechenzentrum,” Informatik Spektrum,
2019, doi: 10.1007/s00287-019-01187-w.'
mla: Platzner, Marco, and Christian Plessl. “FPGAs im Rechenzentrum.” Informatik
Spektrum, 2019, doi:10.1007/s00287-019-01187-w.
short: M. Platzner, C. Plessl, Informatik Spektrum (2019).
date_created: 2019-07-22T12:42:44Z
date_updated: 2023-09-26T11:45:57Z
ddc:
- '004'
department:
- _id: '27'
- _id: '518'
- _id: '78'
doi: 10.1007/s00287-019-01187-w
file:
- access_level: open_access
content_type: application/pdf
creator: plessl
date_created: 2019-07-22T12:45:02Z
date_updated: 2019-07-22T12:45:02Z
file_id: '12872'
file_name: plessl19_informatik_spektrum.pdf
file_size: 248360
relation: main_file
file_date_updated: 2019-07-22T12:45:02Z
has_accepted_license: '1'
language:
- iso: ger
oa: '1'
publication: Informatik Spektrum
publication_identifier:
issn:
- 0170-6012
- 1432-122X
publication_status: published
quality_controlled: '1'
status: public
title: FPGAs im Rechenzentrum
type: journal_article
user_id: '15278'
year: '2019'
...